(Q39134642)

9 September 2017

subSeq: determining appropriate sequencing depth through efficient read subsampling (English)

1 reference

9 September 2017

John D Storey

2

0 references

author name string

David G Robinson

series ordinal

1

1 reference

PMCID

4296149

9 September 2017

language of work or name

English

0 references

publication date

3 September 2014

1 reference

9 September 2017

3

1 reference

based on heuristic

inferred from page(s)

published in

Bioinformatics

1 reference

9 September 2017

30

1 reference

9 September 2017

3424-3426

1 reference

9 September 2017

23

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Creative Commons Attribution-NonCommercial 4.0 International

9 September 2017

start time

2 October 2016

1 reference

April 2023 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4296149

RNA-seq differential expression studies: more sequence or more replication?

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4296149

Comparison of microarrays and RNA-seq for gene expression analyses of dose-response experiments

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4296149

Design and analysis of Bar-seq experiments

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4296149

Comprehensive evaluation of differential gene expression analysis methods for RNA-seq data

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4296149

Evaluating the impact of sequencing depth on transcriptome profiling in human adipose

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4296149

Detecting differential usage of exons from RNA-seq data

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4296149

Evaluation of the coverage and depth of transcriptome by RNA-Seq in chickens

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4296149

ReCount: a multi-experiment resource of analysis-ready RNA-seq gene count datasets

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4296149

Differential expression in RNA-seq: a matter of depth

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4296149

Characterization and improvement of RNA-Seq precision in quantitative transcript expression profiling.

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4296149

RNA-sequence analysis of human B-cells

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4296149

The Drosophila melanogaster transcriptome by paired-end RNA sequencing

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4296149

mRNA-seq with agnostic splice site discovery for nervous system transcriptomics tested in chronic pain

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4296149

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4296149

Scotty: a web tool for designing RNA-Seq experiments to measure differential gene expression

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4296149

10.1093/BIOINFORMATICS/BTU552

17 June 2018

Identifiers

DOI

1 reference

journals/bioinformatics/RobinsonS14

9 September 2017

1 reference

DBLP Dataset 2021-01-02

release_pjro3xdy75futcwjr5univbhz4

28 January 2021

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/pjro3xdy75futcwjr5univbhz4

mapped directly with Wikidata item

24 November 2022

based on heuristic

PMCID

4296149

1 reference

9 September 2017

1 reference

PMCID

4296149