(Q39189720)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27841856%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

title

Single-cell RNA-seq ties macrophage polarization to growth rate of intracellular Salmonella (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27841856%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

0 references

1 reference

single cell transcriptomics

1 reference

A curated database reveals trends in single-cell transcriptomics

7 February 2021

1 reference

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27841856%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

Lei Li

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27841856%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

Silke Appenzeller

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27841856%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

Leon N Schulte

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27841856%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

Sophie Helaine

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27841856%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

author name string

Antoine-Emmanuel Saliba

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27841856%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

Alexander J Westermann

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27841856%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

Daphne A C Stapels

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27841856%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

publication date

14 November 2016

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27841856%20AND%20SRC:MED&resulttype=core&format=json

external data available at URL

27 March 2020

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE79363

1 reference

A curated database reveals trends in single-cell transcriptomics

7 February 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27841856%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

volume

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27841856%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

page(s)

16206

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27841856%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

27 March 2020

cell culture

1 reference

A curated database reveals trends in single-cell transcriptomics

7 February 2021

SMART-Seq

1 reference

A curated database reveals trends in single-cell transcriptomics

https://scigraph.springernature.com/pub.10.1038/nmicrobiol.2016.206

7 February 2021

exact match

0 references

cites work

Heterogeneous host-pathogen encounters: act locally, think globally

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2016.206

21 January 2018

The macrophage paradox

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2016.206

Pathogen Cell-to-Cell Variability Drives Heterogeneity in Host Immune Responses

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2016.206

Persistent bacterial infections: the interface of the pathogen and the host immune system

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2016.206

Phenotypic variation of Salmonella in host tissues delays eradication by antimicrobial chemotherapy.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2016.206

Internalization of Salmonella by macrophages induces formation of nonreplicating persisters.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2016.206

Dynamics of intracellular bacterial replication at the single cell level.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2016.206

Insights into host responses against pathogens from transcriptional profiling.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2016.206

Single-cell RNA-seq: advances and future challenges

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2016.206

Now you see me, now you don't: the interaction of Salmonella with innate immune receptors

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2016.206

Salmonella require the fatty acid regulator PPARδ for the establishment of a metabolic environment essential for long-term persistence

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2016.206

Experimental approaches to phenotypic diversity in infection

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2016.206

Smart-seq2 for sensitive full-length transcriptome profiling in single cells.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2016.206

Metabolic host responses to infection by intracellular bacterial pathogens

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2016.206

Transcriptional regulation of macrophage polarization: enabling diversity with identity

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2016.206

Role for Spi-C in the development of red pulp macrophages and splenic iron homeostasis

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2016.206

Hemophagocytic macrophages harbor Salmonella enterica during persistent infection

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2016.206

The function of Fcγ receptors in dendritic cells and macrophages

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2016.206

Alternative activation of macrophages: an immunologic functional perspective

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2016.206

Regulation of immune responses by L-arginine metabolism

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2016.206

Expression and function of S100A8/A9 (calprotectin) in human typhoid fever and the murine Salmonella model

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2016.206

Macrophage polarization in bacterial infections

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2016.206

Hemophagocytic macrophages in murine typhoid fever have an anti-inflammatory phenotype

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2016.206

Salmonella pathogenicity island 2-dependent evasion of the phagocyte NADPH oxidase.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2016.206

Disparate impact of oxidative host defenses determines the fate of Salmonella during systemic infection in mice

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2016.206

Salmonella Transforms Follicle-Associated Epithelial Cells into M Cells to Promote Intestinal Invasion

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2016.206

Reprogramming adult Schwann cells to stem cell-like cells by leprosy bacilli promotes dissemination of infection

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2016.206

Dual RNA-seq unveils noncoding RNA functions in host–pathogen interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2016.206

Identification of salmonella pathogenicity island-2 type III secretion system effectors involved in intramacrophage replication of S. enterica serovar typhimurium: implications for rational vaccine design.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2016.206

Full-length RNA-seq from single cells using Smart-seq2.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2016.206

Incorporation of non-natural nucleotides into template-switching oligonucleotides reduces background and improves cDNA synthesis from very small RNA samples

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2016.206

Single-cell RNA-seq highlights intratumoral heterogeneity in primary glioblastoma

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2016.206

Cutadapt removes adapter sequences from high-throughput sequencing reads

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2016.206

Fast gapped-read alignment with Bowtie 2

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2016.206

TopHat: discovering splice junctions with RNA-Seq

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2016.206

HTSeq--a Python framework to work with high-throughput sequencing data

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2016.206

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2016.206

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2016.206

Accounting for technical noise in single-cell RNA-seq experiments.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2016.206

Bayesian approach to single-cell differential expression analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2016.206

Characterizing transcriptional heterogeneity through pathway and gene set overdispersion analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2016.206

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2016.206

Single-cell messenger RNA sequencing reveals rare intestinal cell types

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2016.206

Single-cell RNA-seq reveals dynamic paracrine control of cellular variation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2016.206

inferred from DOI database lookup

7 January 2021

based on heuristic

Eta-1 (osteopontin): an early component of type-1 (cell-mediated) immunity

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2016.206

inferred from DOI database lookup

7 January 2021

based on heuristic

FactoMineR: AnRPackage for Multivariate Analysis

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2016.206

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1038/NMICROBIOL.2016.206

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27841856%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

1 reference