(Q39211550)

10 September 2017

ViralFusionSeq: accurately discover viral integration events and reconstruct fusion transcripts at single-base resolution (English)

1 reference

10 September 2017

0 references

0 references

Raymond Wan

2

0 references

author name string

Jing-Woei Li

1

1 reference

10 September 2017

Chi-Shing Yu

3

1 reference

10 September 2017

Ngai Na Co

4

1 reference

10 September 2017

Nathalie Wong

5

1 reference

10 September 2017

Ting-Fung Chan

6

1 reference

10 September 2017

language of work or name

English

0 references

publication date

12 January 2013

1 reference

10 September 2017

1 reference

10 September 2017

29

1 reference

10 September 2017

5

1 reference

10 September 2017

649-651

1 reference

describes a project that uses

10 September 2017

HKCI-5A

0 references

cites work

VirusSeq: software to identify viruses and their integration sites using next-generation sequencing of human cancer tissue

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582262

Non-random integration of the HPV genome in cervical cancer

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582262

ClipCrop: a tool for detecting structural variations with single-base resolution using soft-clipping information

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582262

The effects of hepatitis B virus integration into the genomes of hepatocellular carcinoma patients.

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582262

Dr.VIS: a database of human disease-related viral integration sites

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582262

CREST maps somatic structural variation in cancer genomes with base-pair resolution.

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582262

Identifying viral integration sites using SeqMap 2.0.

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582262

Herpesviruses and chromosomal integration

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582262

Fast and accurate long-read alignment with Burrows-Wheeler transform

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582262

A statistical method for the detection of alternative splicing using RNA-seq

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582262

The Sequence Alignment/Map format and SAMtools

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582262

Fast and accurate short read alignment with Burrows-Wheeler transform

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582262

Hepatitis B virus induced hepatocellular carcinoma

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582262

HBV induced carcinogenesis

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582262

Epstein-Barr virus: 40 years on

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582262

Human papillomavirus is a necessary cause of invasive cervical cancer worldwide

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582262

The majority of viral-cellular fusion transcripts in cervical carcinomas cotranscribe cellular sequences of known or predicted genes

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582262

Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582262

Characterization of viral-cellular fusion transcripts in a large series of HPV16 and 18 positive anogenital lesions

21 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23314323

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/BIOINFORMATICS/BTT011

1 reference

journals/bioinformatics/LiWYCWC13

10 September 2017

1 reference

DBLP Dataset 2021-01-02

release_ylunia7ym5buneutmd6ncmtkl4

28 January 2021

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/ylunia7ym5buneutmd6ncmtkl4

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference

10 September 2017

PubMed publication ID

23314323

1 reference