(Q39214506)

10 September 2017

title

Ab initio computational modeling of long loops in G-protein coupled receptors (English)

1 reference

G protein-coupled receptor

10 September 2017

main subject

0 references

computational biology

1 reference

Sandhya Kortagere

1

1 reference

10 September 2017

Amitava Roy

series ordinal

2

1 reference

10 September 2017

Ernest L Mehler

series ordinal

3

1 reference

10 September 2017

publication date

1 July 2006

1 reference

Journal of Computer - Aided Molecular Design

10 September 2017

published in

1 reference

10 September 2017

volume

20

1 reference

10 September 2017

issue

7-8

1 reference

10 September 2017

page(s)

427-436

1 reference

Seven-transmembrane receptors

10 September 2017

cites work

1 reference

12 December 2020

The binding site of aminergic G protein-coupled receptors: the transmembrane segments and second extracellular loop

1 reference

12 December 2020

Structural mimicry in G protein-coupled receptors: implications of the high-resolution structure of rhodopsin for structure-function analysis of rhodopsin-like receptors

1 reference

12 December 2020

Importance of anchor group positioning in protein loop prediction.

1 reference

12 December 2020

Structure of bovine rhodopsin in a trigonal crystal form.

1 reference

12 December 2020

Evaluating conformational free energies: the colony energy and its application to the problem of loop prediction

1 reference

12 December 2020

1 reference

12 December 2020

Key issues in the computational simulation of GPCR function: representation of loop domains.

1 reference

12 December 2020

Ab initio computational modeling of loops in G-protein-coupled receptors: lessons from the crystal structure of rhodopsin

1 reference

12 December 2020

Ab initio construction of polypeptide fragments: Accuracy of loop decoy discrimination by an all-atom statistical potential and the AMBER force field with the Generalized Born solvation model

1 reference

12 December 2020

Molecular dynamics simulations of peptides and proteins with a continuum electrostatic model based on screened Coulomb potentials.

1 reference

12 December 2020

The second extracellular loop of the dopamine D2 receptor lines the binding-site crevice

1 reference

12 December 2020

Solvation parameters for predicting the structure of surface loops in proteins: Transferability and entropic effects

1 reference

12 December 2020

Efficient Monte Carlo method for simulation of fluctuating conformations of native proteins.

1 reference

12 December 2020

Long dynamics simulations of proteins using atomistic force fields and a continuum representation of solvent effects: calculation of structural and dynamic properties

1 reference

12 December 2020

Acid-base equilibria in rhodopsin: dependence of the protonation state of glu134 on its environment

1 reference

12 December 2020

Protein loop structure prediction with flexible stem geometries.

1 reference

12 December 2020

Functional role of internal water molecules in rhodopsin revealed by X-ray crystallography.

1 reference

12 December 2020

Simultaneous modeling of multiple loops in proteins

1 reference

12 December 2020

The crystallographic model of rhodopsin and its use in studies of other G protein-coupled receptors

1 reference

12 December 2020

Principles that govern the folding of protein chains

1 reference

12 December 2020

Hydrophobicity: two faces of water.

1 reference

12 December 2020

Crystal structure of rhodopsin: A G protein-coupled receptor

1 reference

12 December 2020

New Monte Carlo algorithms for protein folding.

1 reference

12 December 2020

The retinal conformation and its environment in rhodopsin in light of a new 2.2 A crystal structure

1 reference

12 December 2020

A cluster of aromatic residues in the sixth membrane-spanning segment of the dopamine D2 receptor is accessible in the binding-site crevice

1 reference

12 December 2020

Modeling structurally variable regions in homologous proteins with rosetta.

1 reference

12 December 2020

Ab initio construction of polypeptide fragments: efficient generation of accurate, representative ensembles.

1 reference

12 December 2020

Addition of missing loops and domains to protein models by x-ray solution scattering

1 reference

12 December 2020

Generation of accurate protein loop conformations through low-barrier molecular dynamics

1 reference

12 December 2020

A critical analysis of continuum electrostatics: the screened Coulomb potential--implicit solvent model and the study of the alanine dipeptide and discrimination of misfolded structures of proteins

1 reference

12 December 2020

Prediction of loop geometries using a generalized born model of solvation effects

1 reference

12 December 2020

A hierarchical approach to all-atom protein loop prediction

1 reference

12 December 2020

10.1007/S10822-006-9056-0

Identifiers

DOI

1 reference

journals/jcamd/KortagereRM06

10 September 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference