(Q39353807)

11 September 2017

title

Mapping RNA Structure In Vitro with SHAPE Chemistry and Next-Generation Sequencing (SHAPE-Seq). (English)

1 reference

11 September 2017

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27665597%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

author name string

Julius B Lucks

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27665597%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

language of work or name

English

0 references

publication date

1 January 2016

1 reference

Methods in Molecular Biology

11 September 2017

published in

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27665597%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

volume

1490

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27665597%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

page(s)

135-162

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27665597%20AND%20SRC:MED&resulttype=core&format=json

Advances in RNA structure analysis by chemical probing

1 June 2020

cites work

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In vivo genome-wide profiling of RNA secondary structure reveals novel regulatory features.

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SHAPE-Seq 2.0: systematic optimization and extension of high-throughput chemical probing of RNA secondary structure with next generation sequencing

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Directed hydroxyl radical probing of 16S ribosomal RNA in ribosomes containing Fe(II) tethered to ribosomal protein S20.

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Probing RNA structure and RNA-ligand complexes with chemical probes

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A fast-acting reagent for accurate analysis of RNA secondary and tertiary structure by SHAPE chemistry

21 January 2018

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RNA structural analysis by evolving SHAPE chemistry

21 January 2018

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Selective 2'-hydroxyl acylation analyzed by primer extension (SHAPE): quantitative RNA structure analysis at single nucleotide resolution

21 January 2018

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RNA structure analysis at single nucleotide resolution by selective 2'-hydroxyl acylation and primer extension (SHAPE)

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Fingerprinting noncanonical and tertiary RNA structures by differential SHAPE reactivity.

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Multiplexed RNA structure characterization with selective 2'-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq)

21 January 2018

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A simple and efficient method to reduce nontemplated nucleotide addition at the 3 terminus of RNAs transcribed by T7 RNA polymerase

21 January 2018

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Safer one-pot synthesis of the 'SHAPE' reagent 1-methyl-7-nitroisatoic anhydride (1m7).

21 January 2018

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Time-resolved RNA SHAPE chemistry: quantitative RNA structure analysis in one-second snapshots and at single-nucleotide resolution

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21 January 2018

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27665597%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

1 reference