(Q39400616)

11 September 2017

title

Breaking RAD: An evaluation of the utility of restriction site associated DNA sequencing for genome scans of adaptation (English)

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11 September 2017

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2

Sean Hoban

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11 September 2017

David B Lowry

1

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11 September 2017

Joanna L Kelley

3

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11 September 2017

Katie E Lotterhos

4

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11 September 2017

Laura K Reed

5

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11 September 2017

Michael F Antolin

6

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11 September 2017

Andrew Storfer

7

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11 September 2017

publication date

12 September 2016

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Molecular Ecology Resources

11 September 2017

published in

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Linkage disequilibrium in humans: models and data

11 September 2017

cites work

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12 December 2020

Whole-genome patterns of common DNA variation in three human populations

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12 December 2020

Nucleotide polymorphism and linkage disequilibrium in wild populations of the partial selfer Caenorhabditis elegans

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12 December 2020

High nucleotide polymorphism and rapid decay of linkage disequilibrium in wild populations of Caenorhabditis remanei

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12 December 2020

Levels of linkage disequilibrium in a wild bird population

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12 December 2020

Rapid and cost-effective polymorphism identification and genotyping using restriction site associated DNA (RAD) markers

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12 December 2020

The evolutionary significance of cis-regulatory mutations

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12 December 2020

The locus of evolution: evo devo and the genetics of adaptation

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12 December 2020

Using multilocus sequence data to assess population structure, natural selection, and linkage disequilibrium in wild tomatoes

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12 December 2020

Recombination and linkage disequilibrium in Arabidopsis thaliana.

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12 December 2020

Linkage disequilibrium in wild mice

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12 December 2020

The extent of linkage disequilibrium in rice (Oryza sativa L.).

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12 December 2020

Demographic history has influenced nucleotide diversity in European Pinus sylvestris populations

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12 December 2020

Population genomics of the wild yeast Saccharomyces paradoxus: Quantifying the life cycle

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12 December 2020

The loci of evolution: how predictable is genetic evolution?

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12 December 2020

Rapid SNP discovery and genetic mapping using sequenced RAD markers

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12 December 2020

Nucleotide variation, linkage disequilibrium and founder-facilitated speciation in wild populations of the zebra finch (Taeniopygia guttata)

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12 December 2020

Divergent selection and heterogeneous genomic divergence

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12 December 2020

A Quantitative Survey of Local Adaptation and Fitness Trade‐Offs

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12 December 2020

Multilocus patterns of nucleotide diversity and divergence reveal positive selection at candidate genes related to cold hardiness in coastal Douglas Fir (Pseudotsuga menziesii var. menziesii).

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12 December 2020

Extensive linkage disequilibrium in a wild bird population.

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12 December 2020

The genetics of human adaptation: hard sweeps, soft sweeps, and polygenic adaptation

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12 December 2020

Population genomics of parallel adaptation in threespine stickleback using sequenced RAD tags

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12 December 2020

Restriction Site Tiling Analysis: accurate discovery and quantitative genotyping of genome-wide polymorphisms using nucleotide arrays

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12 December 2020

Low linkage disequilibrium in wild Anopheles gambiae s.l. populations

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12 December 2020

Multiplexed shotgun genotyping for rapid and efficient genetic mapping

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12 December 2020

Mapping with RAD (restriction-site associated DNA) markers to rapidly identify QTL for stem rust resistance in Lolium perenne

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12 December 2020

Enhanced AFLP genome scans detect local adaptation in high-altitude populations of a small rodent (Microtus arvalis).

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12 December 2020

A genome-wide set of SNPs detects population substructure and long range linkage disequilibrium in wild sheep

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12 December 2020

Evolutionary genetics of plant adaptation

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12 December 2020

A robust, simple genotyping-by-sequencing (GBS) approach for high diversity species

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12 December 2020

Population genomics of wild and laboratory zebrafish (Danio rerio)

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12 December 2020

Whole-genome nucleotide diversity, recombination, and linkage disequilibrium in the model legume Medicago truncatula

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12 December 2020

Molecular spandrels: tests of adaptation at the genetic level.

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12 December 2020

The genomic basis of adaptive evolution in threespine sticklebacks

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12 December 2020

Sequence-based genotyping for marker discovery and co-dominant scoring in germplasm and populations

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12 December 2020

Double digest RADseq: an inexpensive method for de novo SNP discovery and genotyping in model and non-model species

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12 December 2020

Characterisation of QTL-linked and genome-wide restriction site-associated DNA (RAD) markers in farmed Atlantic salmon.

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12 December 2020

Special features of RAD Sequencing data: implications for genotyping

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12 December 2020

Discrete genetic modules are responsible for complex burrow evolution in Peromyscus mice.

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12 December 2020

Genomic signatures of selection at linked sites: unifying the disparity among species

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12 December 2020

Enhancers: five essential questions

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12 December 2020

RADseq underestimates diversity and introduces genealogical biases due to nonrandom haplotype sampling

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12 December 2020

The population structure and recent colonization history of Oregon threespine stickleback determined using restriction-site associated DNA-sequencing.

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12 December 2020

Candidate genes and genetic architecture of symbiotic and agronomic traits revealed by whole-genome, sequence-based association genetics in Medicago truncatula.

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12 December 2020

De novo sequencing of sunflower genome for SNP discovery using RAD (Restriction site Associated DNA) approach

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12 December 2020

Ecological genomics of local adaptation

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12 December 2020

Diversity, differentiation, and linkage disequilibrium: prospects for association mapping in the malaria vector Anopheles arabiensis

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12 December 2020

Recent updates and developments to plant genome size databases.

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12 December 2020

Generation of SNP datasets for orangutan population genomics using improved reduced-representation sequencing and direct comparisons of SNP calling algorithms

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12 December 2020

On detecting incomplete soft or hard selective sweeps using haplotype structure

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12 December 2020

Evaluation of demographic history and neutral parameterization on the performance of FST outlier tests

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12 December 2020

Genome-wide single-generation signatures of local selection in the panmictic European eel.

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12 December 2020

Population genomics of parallel hybrid zones in the mimetic butterflies, H. melpomene and H. erato

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12 December 2020

A worldwide survey of genome sequence variation provides insight into the evolutionary history of the honeybee Apis mellifera

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12 December 2020

Sequencing pools of individuals — mining genome-wide polymorphism data without big funding

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12 December 2020

The genetics of divergence and reproductive isolation between ecotypes of Panicum hallii

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12 December 2020

Demystifying the RAD fad.

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12 December 2020

Detection and removal of PCR duplicates in population genomic ddRAD studies by addition of a degenerate base region (DBR) in sequencing adapters

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12 December 2020

Advances and limits of using population genetics to understand local adaptation

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12 December 2020

Selection on meiosis genes in diploid and tetraploid Arabidopsis arenosa

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12 December 2020

Trans-Pacific RAD-Seq population genomics confirms introgressive hybridization in Eastern Pacific Pocillopora corals.

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12 December 2020

Employing genome-wide SNP discovery and genotyping strategy to extrapolate the natural allelic diversity and domestication patterns in chickpea.

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12 December 2020

The genomes of two key bumblebee species with primitive eusocial organization

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12 December 2020

Towards the identification of the loci of adaptive evolution

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12 December 2020

Commentary: When does understanding phenotypic evolution require identification of the underlying genes?

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12 December 2020

RAD-QTL Mapping Reveals Both Genome-Level Parallelism and Different Genetic Architecture Underlying the Evolution of Body Shape in Lake Whitefish (Coregonus clupeaformis) Species Pairs

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12 December 2020

Phylogeny and biogeography of the American live oaks (Quercus subsection Virentes): a genomic and population genetics approach

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12 December 2020

Targeted capture in evolutionary and ecological genomics.

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12 December 2020

A practical guide to environmental association analysis in landscape genomics.

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12 December 2020

Morphological and genomic comparisons of Hawaiian and Japanese Black-footed Albatrosses (Phoebastria nigripes) using double digest RADseq: implications for conservation

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12 December 2020

Nucleotide diversity patterns of three divergent soybean populations: evidences for population-dependent linkage disequilibrium and taxonomic status of Glycine gracilis

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12 December 2020

The genomics of ecological vicariance in threespine stickleback fish

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12 December 2020

Convergent Evolution of Hemoglobin Function in High-Altitude Andean Waterfowl Involves Limited Parallelism at the Molecular Sequence Level

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12 December 2020

Harnessing the power of RADseq for ecological and evolutionary genomics

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12 December 2020

Genomic Evidence for Adaptive Inversion Clines in Drosophila melanogaster.

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12 December 2020

Recombination Rate Evolution and the Origin of Species

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12 December 2020

A uniform survey of allele-specific binding and expression over 1000-Genomes-Project individuals

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12 December 2020

Finding the Genomic Basis of Local Adaptation: Pitfalls, Practical Solutions, and Future Directions

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12 December 2020

DEVELOPMENTAL CORRELATES OF GENOME SIZE IN PLETHODONTID SALAMANDERS AND THEIR IMPLICATIONS FOR GENOME EVOLUTION.

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12 December 2020

Two sites in the Delta gene region contribute to naturally occurring variation in bristle number in Drosophila melanogaster

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12 December 2020

Identifiers

DOI

10.1111/1755-0998.12596

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11 September 2017

27860289

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