(Q39470880)

12 September 2017

Spotting the difference in molecular dynamics simulations of biomolecules (English)

1 reference

12 September 2017

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27544096%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

Hidetoshi Kono

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27544096%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

author name string

Shun Sakuraba

series ordinal

1

1 reference

12 September 2017

Hidetoshi Kono

series ordinal

2

1 reference

12 September 2017

language of work or name

English

0 references

publication date

1 August 2016

1 reference

Journal of Chemical Physics

12 September 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27544096%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

volume

145

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27544096%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

issue

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27544096%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

page(s)

074116

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27544096%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

12 June 2020

copyright license

start time

19 August 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

cites work

Essential dynamics of proteins

1 reference

The role of conformational ensembles in ligand recognition in G-protein coupled receptors.

21 January 2018

1 reference

Transform and relax sampling for highly anisotropic systems: application to protein domain motion and folding

21 January 2018

1 reference

Ubiquitin dynamics in complexes reveal molecular recognition mechanisms beyond induced fit and conformational selection

21 January 2018

1 reference

Principal component analysis of native ensembles of biomolecular structures (PCA_NEST): insights into functional dynamics

21 January 2018

1 reference

On a Theorem of Weyl Concerning Eigenvalues of Linear Transformations I.

21 January 2018

1 reference

The use of multiple measurements in taxonomic problems

21 January 2018

1 reference

Detecting coupled collective motions in protein by independent subspace analysis.

21 January 2018

1 reference

Structure of bacteriophage T4 lysozyme refined at 1.7 A resolution

21 January 2018

1 reference

Comparison of multiple Amber force fields and development of improved protein backbone parameters

21 January 2018

1 reference

Improved side-chain torsion potentials for the Amber ff99SB protein force field

21 January 2018

1 reference

Comparison of simple potential functions for simulating liquid water

21 January 2018

1 reference

Molecular dynamics simulations at constant pressure and/or temperature

21 January 2018

1 reference

P-LINCS: A Parallel Linear Constraint Solver for Molecular Simulation.

21 January 2018

1 reference

GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit

21 January 2018

1 reference

Bad Seeds Sprout Perilous Dynamics: Stochastic Thermostat Induced Trajectory Synchronization in Biomolecules

21 January 2018

1 reference

Signaling pathways of PDZ2 domain: a molecular dynamics interaction correlation analysis

21 January 2018

1 reference

Solution structure of the PDZ2 domain from human phosphatase hPTP1E and its interactions with C-terminal peptides from the Fas receptor

21 January 2018

1 reference

Solution structure of the PDZ2 domain from cytosolic human phosphatase hPTP1E complexed with a peptide reveals contribution of the beta2-beta3 loop to PDZ domain-ligand interactions

21 January 2018

1 reference

Structure, dynamics and binding characteristics of the second PDZ domain of PTP-BL

21 January 2018

1 reference

Ligand-dependent dynamics and intramolecular signaling in a PDZ domain

21 January 2018

1 reference

Domain motions in bacteriophage T4 lysozyme: a comparison between molecular dynamics and crystallographic data.

21 January 2018

1 reference

Evaluation at atomic resolution of the role of strain in destabilizing the temperature-sensitive T4 lysozyme mutant Arg 96 → His

21 January 2018

1 reference

Simulation analysis of the stability mutant R96H of T4 lysozyme.

21 January 2018

1 reference

Locally accessible conformations of proteins: multiple molecular dynamics simulations of crambin

21 January 2018

1 reference

Computational techniques for efficient conformational sampling of proteins

21 January 2018

1 reference

Partial least-squares functional mode analysis: application to the membrane proteins AQP1, Aqy1, and CLC-ec1

21 January 2018

1 reference

Detection of functional modes in protein dynamics

21 January 2018

1 reference

VMD: visual molecular dynamics

21 January 2018

1 reference

Molecular dynamics with coupling to an external bath

21 January 2018

1 reference

Free-Energy Landscapes of Protein Domain Movements upon Ligand Binding

21 January 2018

1 reference

Alternate Structural Conformations of Streptococcus pneumoniae Hyaluronan Lyase: Insights into Enzyme Flexibility and Underlying Molecular Mechanism of Action

21 January 2018

1 reference

21 January 2018

Identifiers

DOI

10.1063/1.4961227

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27544096%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

1 reference