(Q39606113)

13 September 2017

Two-dimensional target decoy strategy for shotgun proteomics (English)

1 reference

13 September 2017

1 reference

Marshall W Bern

1

1 reference

PMC publication ID

3230778

13 September 2017

Yong J Kil

series ordinal

2

1 reference

13 September 2017

7 November 2011

1 reference

Journal of Proteome Research

13 September 2017

1 reference

13 September 2017

10

1 reference

13 September 2017

12

1 reference

13 September 2017

5296-5301

1 reference

An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

13 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3230778

Preview: a program for surveying shotgun proteomics tandem mass spectrometry data

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3230778

Comment on "Unbiased statistical analysis for multi-stage proteomic search strategies".

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3230778

Protein identification false discovery rates for very large proteomics data sets generated by tandem mass spectrometry

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3230778

Improvements to the percolator algorithm for Peptide identification from shotgun proteomics data sets

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3230778

Decoy Methods for Assessing False Positives and False Discovery Rates in Shotgun Proteomics

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3230778

Improved ranking functions for protein and modification-site identifications

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3230778

Probability model for assessing proteins assembled from peptide sequences inferred from tandem mass spectrometry data

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3230778

Validated MALDI-TOF/TOF mass spectra for protein standards

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3230778

Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3230778

Lookup peaks: a hybrid of de novo sequencing and database search for protein identification by tandem mass spectrometry

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3230778

Interpretation of shotgun proteomic data: the protein inference problem

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3230778

A Heuristic method for assigning a false-discovery rate for protein identifications from Mascot database search results

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3230778

Probability-based protein identification by searching sequence databases using mass spectrometry data

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3230778

On the estimation of false positives in peptide identifications using decoy search strategy

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3230778

A refined method to calculate false discovery rates for peptide identification using decoy databases.

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3230778

Nonlinear fitting method for determining local false discovery rates from decoy database searches.

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3230778

Semi-supervised learning for peptide identification from shotgun proteomics datasets.

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3230778

Qscore: an algorithm for evaluating SEQUEST database search results

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3230778

Unbiased statistical analysis for multi-stage proteomic search strategies

21 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22010998

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1021/PR200780J

1 reference

13 September 2017

1 reference

PMC publication ID

3230778

13 September 2017

PubMed publication ID

22010998

1 reference

PMC publication ID

3230778