(Q39731513)

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A mini-RNA containing the tetraloop, wobble-pair and loop E motifs of the central conserved region of potato spindle tuber viroid is processed into a minicircle

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Europe PubMed Central

PMC publication ID

14 September 2017

A mini-RNA containing the tetraloop, wobble-pair and loop E motifs of the central conserved region of potato spindle tuber viroid is processed into a minicircle (English)

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

potato spindle tuber viroid

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potato spindle tuber viroid

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author name string

O Schrader

1

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

T Baumstark

2

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Europe PubMed Central

PMC publication ID

14 September 2017

D Riesner

3

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Europe PubMed Central

PMC publication ID

14 September 2017

language of work or name

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publication date

1 February 2003

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Europe PubMed Central

PMC publication ID

14 September 2017

Nucleic Acids Research

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Europe PubMed Central

PMC publication ID

14 September 2017

31

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Europe PubMed Central

PMC publication ID

14 September 2017

3

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

988-998

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

Detection and analysis of hairpin II, an essential metastable structural element in viroid replication intermediates

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=149213

14 September 2017

Recent insights on RNA folding mechanisms from catalytic RNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=149213

14 September 2017

Conserved geometrical base-pairing patterns in RNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=149213

14 September 2017

On the wobble GoU and related pairs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=149213

14 September 2017

Non-coding, mRNA-like RNAs database Y2K.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=149213

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=149213

14 September 2017

Viroids with hammerhead ribozymes: some unique structural and functional aspects with respect to other members of the group

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=149213

14 September 2017

Viroids and the nature of viroid diseases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=149213

14 September 2017

Subcellular localization and rolling circle replication of peach latent mosaic viroid: hallmarks of group A viroids

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=149213

14 September 2017

Chemical mapping of co-existing RNA structures

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=149213

14 September 2017

Metals, motifs, and recognition in the crystal structure of a 5S rRNA domain

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=149213

14 September 2017

Hierarchy and dynamics of RNA folding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=149213

14 September 2017

Insights into specificity of cleavage and mechanism of cell entry from the crystal structure of the highly specific Aspergillus ribotoxin, restrictocin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=149213

14 September 2017

Minor groove recognition of the conserved G.U pair at the Tetrahymena ribozyme reaction site

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=149213

14 September 2017

Exceptionally stable nucleic acid hairpins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=149213

14 September 2017

Ultraviolet light-induced crosslinking reveals a unique region of local tertiary structure in potato spindle tuber viroid and HeLa 5S RNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=149213

14 September 2017

Analysis of the RNA structural elements involved in the binding of the transcription factor III A from Xenopus laevis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=149213

14 September 2017

Viroid processing: a model involving the central conserved region and hairpin I.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=149213

14 September 2017

Characterization of RNA hairpin loop stability

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=149213

14 September 2017

Interaction of elongation factors EF-G and EF-Tu with a conserved loop in 23S RNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=149213

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=149213

14 September 2017

Architecture of ribosomal RNA: constraints on the sequence of "tetra-loops"

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=149213

14 September 2017

A thermodynamic study of unusually stable RNA and DNA hairpins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=149213

14 September 2017

Thermodynamic parameters for loop formation in RNA and DNA hairpin tetraloops

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=149213

14 September 2017

Nucleotide sequence and secondary structure of potato spindle tuber viroid

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=149213

14 September 2017

Thermal denaturation of double-stranded nucleic acids: prediction of temperatures critical for gradient gel electrophoresis and polymerase chain reaction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=149213

14 September 2017

Only one of four possible secondary structures of the central conserved region of potato spindle tuber viroid is a substrate for processing in a potato nuclear extract

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=149213

14 September 2017

A Replication Cycle for Viroids and Other Small Infectious RNA's

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=149213

14 September 2017

Structure of viroid replicative intermediates: physico-chemical studies on SP6 transcripts of cloned oligomeric potato spindle tuber viroid

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=149213

14 September 2017

RNA structure and the regulation of gene expression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=149213

25 September 2017

Dynamic competition between alternative structures in viroid RNAs simulated by an RNA folding algorithm.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=149213

15 June 2018

Viroid processing: switch from cleavage to ligation is driven by a change from a tetraloop to a loop E conformation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=149213

15 June 2018

Description of RNA folding by "simulated annealing".

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=149213

15 June 2018

Infectivity of linear monomeric transcripts of citrus exocortis viroid: terminal sequence requirements for processing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=149213

15 June 2018

Cloned single- and double-stranded DNA copies of potato spindle tuber viroid (PSTV) RNA and co-inoculated subgenomic DNA fragments are infectious.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=149213

15 June 2018

Potato spindle tuber virus: a plant virus with properties of a free nucleic acid. 3. Subcellular location of PSTV-RNA and the question of whether virions exist in extracts or in situ

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=149213

15 June 2018

RNA synthesis: strategies for the use of bacteriophage RNA polymerases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=149213

15 June 2018

Temperature-gradient gel electrophoresis. Thermodynamic analysis of nucleic acids and proteins in purified form and in cellular extracts

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=149213

15 June 2018

Synthesis and purification of large amounts of RNA oligonucleotides.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=149213

15 June 2018

Transcripts of the viroid central conserved region contain the local tertiary structural element found in full-length viroid

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=149213

15 June 2018

Base-pair probability profiles of RNA secondary structures.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=149213

15 June 2018

Viroid replication is inhibited by alpha-amanitin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=149213

15 June 2018

Structure and structure formation of viroids

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=149213

15 June 2018

Calculating the electrostatic properties of RNA provides new insights into molecular interactions and function

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=149213

20 August 2018

Formation of metastable RNA structures by sequential folding during transcription: time-resolved structural analysis of potato spindle tuber viroid (-)-stranded RNA by temperature-gradient gel electrophoresis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=149213

20 August 2018

Structure and stability of variants of the sarcin-ricin loop of 28S rRNA: NMR studies of the prokaryotic SRL and a functional mutant

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=149213

20 August 2018

The role of the viroid central conserved region in cDNA infectivity

1 reference

https://pubmed.ncbi.nlm.nih.gov/12560495

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural requirements for viroid processing by RNase T1

1 reference

https://pubmed.ncbi.nlm.nih.gov/12560495

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural determinants in 5S RNA and TFIIIA for 7S RNP formation

1 reference

https://pubmed.ncbi.nlm.nih.gov/12560495

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A single nucleotide substitution converts potato spindle tuber viroid (PSTVd) from a noninfectious to an infectious RNA for nicotiana tabacum

1 reference

https://pubmed.ncbi.nlm.nih.gov/12560495

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Analysis of RNA structures by temperature-gradient gel electrophoresis: viroid replication and processing

1 reference

https://pubmed.ncbi.nlm.nih.gov/12560495

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Oligomeric potato spindle tuber viroid (PSTV) RNA does not process autocatalytically under conditions where other RNAs do

1 reference

https://pubmed.ncbi.nlm.nih.gov/12560495

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A photo-cross-linkable tertiary structure motif found in functionally distinct RNA molecules is essential for catalytic function of the hairpin ribozyme

1 reference

https://pubmed.ncbi.nlm.nih.gov/12560495

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Complexes containing both polarity strands of avocado sunblotch viroid: identification in chloroplasts and characterization

1 reference

https://pubmed.ncbi.nlm.nih.gov/12560495

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Functional contacts of a transfer RNA synthetase with 2′-hydroxyl groups in the RNA minor groove

1 reference

https://pubmed.ncbi.nlm.nih.gov/12560495

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Determination of the 28 S ribosomal RNA identity element (G4319) for alpha-sarcin and the relationship of recognition to the selection of the catalytic site

1 reference

https://pubmed.ncbi.nlm.nih.gov/12560495

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1093/NAR/GKG193

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

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