(Q39744550)

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Unique example of amyloid aggregates stabilized by main chain H-bond instead of the steric zipper: molecular dynamics study of the amyloidogenic segment of amylin wild-type and mutants.

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Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21625904%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

Unique example of amyloid aggregates stabilized by main chain H-bond instead of the steric zipper: molecular dynamics study of the amyloidogenic segment of amylin wild-type and mutants (English)

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21625904%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

2

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21625904%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

author name string

Workalemahu Mikre Berhanu

1

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21625904%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

publication date

28 May 2011

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21625904%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

Journal of Molecular Modeling

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21625904%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

18

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21625904%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

3

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21625904%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

891-903

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21625904%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

Protein misfolding, functional amyloid, and human disease

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

21 January 2018

Amyloid oligomers: dynamics and toxicity in the cytosol and nucleus

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

21 January 2018

Supramolecular structural constraints on Alzheimer's beta-amyloid fibrils from electron microscopy and solid-state nuclear magnetic resonance.

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

21 January 2018

Purification and characterization of a peptide from amyloid-rich pancreases of type 2 diabetic patients

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

21 January 2018

Amyloid fibrils in human insulinoma and islets of Langerhans of the diabetic cat are derived from a neuropeptide-like protein also present in normal islet cells

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

21 January 2018

Extensive islet amyloid formation is induced by development of Type II diabetes mellitus and contributes to its progression: pathogenesis of diabetes in a mouse model

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

21 January 2018

Amyloid fibrils formed from a segment of the pancreatic islet amyloid protein

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

21 January 2018

Analysis of amylin cleavage products provides new insights into the amyloidogenic region of human amylin

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

21 January 2018

Atomic structures of amyloid cross-beta spines reveal varied steric zippers

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

21 January 2018

Identification of a penta- and hexapeptide of islet amyloid polypeptide (IAPP) with amyloidogenic and cytotoxic properties

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

21 January 2018

Identification of a novel human islet amyloid polypeptide beta-sheet domain and factors influencing fibrillogenesis

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

21 January 2018

Atomic structure of the cross-β spine of islet amyloid polypeptide (amylin)

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

21 January 2018

Identification of hot regions of the Abeta-IAPP interaction interface as high-affinity binding sites in both cross- and self-association

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

21 January 2018

Mapping abeta amyloid fibril secondary structure using scanning proline mutagenesis

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

21 January 2018

Amyloidogenic sequences in native protein structures

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

21 January 2018

Amyloid inhibitors enhance survival of cultured human islets

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

21 January 2018

Effects of sequential proline substitutions on amyloid formation by human amylin20-29.

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

21 January 2018

Destabilization of human IAPP amyloid fibrils by proline mutations outside of the putative amyloidogenic domain: is there a critical amyloidogenic domain in human IAPP?

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

21 January 2018

Dynamics and stability of amyloid-like steric zipper assemblies with hydrophobic dry interfaces.

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

21 January 2018

Molecular dynamics analyses of cross-beta-spine steric zipper models: beta-sheet twisting and aggregation

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

21 January 2018

Elongation of ordered peptide aggregate of an amyloidogenic hexapeptide NFGAIL observed in molecular dynamics simulations with explicit solvent

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

21 January 2018

Phenol red interacts with the protofibril-like oligomers of an amyloidogenic hexapeptide NFGAIL through both hydrophobic and aromatic contacts.

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

21 January 2018

Molecular dynamics simulations of Ibuprofen binding to Abeta peptides

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

21 January 2018

Natural polyphenols as inhibitors of amyloid aggregation. Molecular dynamics study of GNNQQNY heptapeptide decamer.

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

21 January 2018

All-atom computer simulations of amyloid fibrils disaggregation

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

21 January 2018

Assembly dynamics of two-beta sheets revealed by molecular dynamics simulations

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

21 January 2018

Conformational transition of amyloid beta-peptide

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

21 January 2018

The sequence dependence of fiber organization. A comparative molecular dynamics study of the islet amyloid polypeptide segments 22-27 and 22-29.

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

21 January 2018

Peptide sequence and amyloid formation; molecular simulations and experimental study of a human islet amyloid polypeptide fragment and its analogs

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

21 January 2018

Probing the pressure-temperature stability of amyloid fibrils provides new insights into their molecular properties

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

21 January 2018

The Amber biomolecular simulation programs

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

21 January 2018

VMD: visual molecular dynamics

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

21 January 2018

An improved hydrogen bond potential: impact on medium resolution protein structures.

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

21 January 2018

Mutations alter the geometry and mechanical properties of Alzheimer's Aβ(1-40) amyloid fibrils.

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

21 January 2018

Modeling the Alzheimer Abeta17-42 fibril architecture: tight intermolecular sheet-sheet association and intramolecular hydrated cavities

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

21 January 2018

Structure and dynamics of parallel beta-sheets, hydrophobic core, and loops in Alzheimer's A beta fibrils

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

21 January 2018

Impact of the mutation A21G (Flemish variant) on Alzheimer's beta-amyloid dimers by molecular dynamics simulations

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

21 January 2018

Inhibition of islet amyloid polypeptide fibril formation: a potential role for heteroaromatic interactions

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

21 January 2018

Structural stability and dynamics of an amyloid-forming peptide GNNQQNY from the yeast prion sup-35.

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

21 January 2018

Analysis of the minimal amyloid-forming fragment of the islet amyloid polypeptide. An experimental support for the key role of the phenylalanine residue in amyloid formation

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

21 January 2018

Rationalization of the effects of mutations on peptide and protein aggregation rates.

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

21 January 2018

Completely different amyloidogenic potential of nearly identical peptide fragments

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

21 January 2018

Strategies for the inhibition of protein aggregation in human diseases

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

21 January 2018

Amyloid-beta fibrillogenesis: structural insight and therapeutic intervention

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

21 January 2018

Energetics of protein hydrogen bonds

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

21 January 2018

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

21 January 2018

Calculating structures and free energies of complex molecules: combining molecular mechanics and continuum models

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

21 January 2018

Molecular dynamics and free-energy calculations applied to affinity maturation in antibody 48G7.

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

21 January 2018

Use of MM-PBSA in reproducing the binding free energies to HIV-1 RT of TIBO derivatives and predicting the binding mode to HIV-1 RT of efavirenz by docking and MM-PBSA.

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

21 January 2018

Insights into protein-protein binding by binding free energy calculation and free energy decomposition for the Ras-Raf and Ras-RalGDS complexes.

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

21 January 2018

Free energy calculations on dimer stability of the HIV protease using molecular dynamics and a continuum solvent model

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

21 January 2018

Computational alanine scanning of the 1:1 human growth hormone-receptor complex

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

21 January 2018

Protein-protein recognition and interaction hot spots in an antigen-antibody complex: free energy decomposition identifies "efficient amino acids".

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

21 January 2018

Study of the insulin dimerization: binding free energy calculations and per-residue free energy decomposition

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

21 January 2018

Binding free energies and free energy components from molecular dynamics and Poisson-Boltzmann calculations. Application to amino acid recognition by aspartyl-tRNA synthetase

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

21 January 2018

Energetic decomposition with the generalized-born and Poisson-Boltzmann solvent models: lessons from association of G-protein components.

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

21 January 2018

Electrostatic interactions in the GCN4 leucine zipper: substantial contributions arise from intramolecular interactions enhanced on binding

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

21 January 2018

Insights into stability and toxicity of amyloid-like oligomers by replica exchange molecular dynamics analyses.

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

21 January 2018

Inhibitors of protein aggregation and toxicity

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

21 January 2018

Suppression of IAPP fibrillation at anionic lipid membranes via IAPP-derived amyloid inhibitors and insulin

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

21 January 2018

Particle mesh Ewald: An N⋅log(N) method for Ewald sums in large systems

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1030-7

21 January 2018

Structure, dynamics, and stability of assemblies of the human prion fragment SNQNNF

1 reference

https://pubmed.ncbi.nlm.nih.gov/21625904

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Kinetically controlled thermal response of beta2-microglobulin amyloid fibrils

1 reference

https://pubmed.ncbi.nlm.nih.gov/21625904

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular dynamics simulations of Alzheimer Abeta40 elongation and lateral association.

1 reference

https://pubmed.ncbi.nlm.nih.gov/21625904

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

MMPBSA decomposition of the binding energy throughout a molecular dynamics simulation of amyloid-beta (Abeta(10-35)) aggregation.

1 reference

https://pubmed.ncbi.nlm.nih.gov/21625904

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Factors that affect the degree of twist in beta-sheet structures: a molecular dynamics simulation study of a cross-beta filament of the GNNQQNY peptide

1 reference

https://pubmed.ncbi.nlm.nih.gov/21625904

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

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