(Q35023902)

5 August 2017

title

Structural stability and dynamics of an amyloid-forming peptide GNNQQNY from the yeast prion sup-35. (English)

1 reference

5 August 2017

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2

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5 August 2017

Jie Zheng

1

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Ruth Nussinov

series ordinal

4

object named as

Ruth Nussinov

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5 August 2017

3

Chung-Jung Tsai

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5 August 2017

language of work or name

English

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publication date

5 May 2006

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5 August 2017

number of pages

10

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based on heuristic

inferred from page(s)

published in

Biophysical Journal

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5 August 2017

volume

91

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5 August 2017

issue

3

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5 August 2017

page(s)

824-833

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All-atom empirical potential for molecular modeling and dynamics studies of proteins

5 August 2017

cites work

1 reference

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3D structure of Alzheimer's amyloid-beta(1-42) fibrils

8 July 2018

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Intersheet rearrangement of polypeptides during nucleation of {beta}-sheet aggregates

8 July 2018

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Structure of the cross-beta spine of amyloid-like fibrils

8 July 2018

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Energy landscape of amyloidogenic peptide oligomerization by parallel-tempering molecular dynamics simulation: significant role of Asn ladder

8 July 2018

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Molecular basis for amyloid fibril formation and stability

8 July 2018

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In silico study of amyloid beta-protein folding and oligomerization

8 July 2018

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Molecular dynamics simulations of spontaneous fibril formation by random-coil peptides

8 July 2018

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Molecular dynamics simulation of amyloid beta dimer formation

8 July 2018

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Mechanism of prion propagation: amyloid growth occurs by monomer addition

8 July 2018

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Formation of partially ordered oligomers of amyloidogenic hexapeptide (NFGAIL) in aqueous solution observed in molecular dynamics simulations

8 July 2018

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The stability and dynamics of the human calcitonin amyloid peptide DFNKF

8 July 2018

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Small assemblies of unmodified amyloid beta-protein are the proximate neurotoxin in Alzheimer's disease

8 July 2018

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Progress towards a molecular-level structural understanding of amyloid fibrils

8 July 2018

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Principles of protein folding, misfolding and aggregation

8 July 2018

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Emerging ideas on the molecular basis of protein and peptide aggregation

8 July 2018

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Common structure of soluble amyloid oligomers implies common mechanism of pathogenesis

8 July 2018

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The role of side-chain interactions in the early steps of aggregation: Molecular dynamics simulations of an amyloid-forming peptide from the yeast prion Sup35

8 July 2018

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Short peptide amyloid organization: stabilities and conformations of the islet amyloid peptide NFGAIL

8 July 2018

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A structural model for Alzheimer's beta -amyloid fibrils based on experimental constraints from solid state NMR

8 July 2018

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Stabilities and conformations of Alzheimer's beta -amyloid peptide oligomers (Abeta 16-22, Abeta 16-35, and Abeta 10-35): Sequence effects

8 July 2018

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Inherent toxicity of aggregates implies a common mechanism for protein misfolding diseases

8 July 2018

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A possible role for pi-stacking in the self-assembly of amyloid fibrils

8 July 2018

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Amyloid beta-protein oligomerization: prenucleation interactions revealed by photo-induced cross-linking of unmodified proteins

8 July 2018

1 reference

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An amyloid-forming peptide from the yeast prion Sup35 reveals a dehydrated beta-sheet structure for amyloid

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1563778

Favorable entropy of aromatic clusters in thermophilic proteins

8 July 2018

1 reference

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Experimental evidence for the reorganization of beta-strands within aggregates of the Abeta(16-22) peptide.

25 October 2018

1 reference

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Evidence for a mechanism of amyloid formation involving molecular reorganisation within native-like precursor aggregates

25 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1563778

Protein misfolding and amyloid formation for the peptide GNNQQNY from yeast prion protein Sup35: simulation by reaction path annealing

25 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1563778

Amyloid beta-protein: monomer structure and early aggregation states of Abeta42 and its Pro19 alloform.

25 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1563778

Cutoff size need not strongly influence molecular dynamics results for solvated polypeptides

25 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1563778

Peptide sequence and amyloid formation; molecular simulations and experimental study of a human islet amyloid polypeptide fragment and its analogs

25 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1563778

Amyloid fibril formation by pentapeptide and tetrapeptide fragments of human calcitonin

25 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1563778

The Organization and Assembly of a β-Sheet Formed by a Prion Peptide in Solution: An Isotope-Edited FTIR Study

25 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16679374

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1529/BIOPHYSJ.106.083246

1 reference

5 August 2017

1 reference

5 August 2017

1 reference