(Q39792205)

English

Molecular dynamics reveals the stabilizing role of loop closing residues in kissing interactions: comparison between TAR-TAR* and TAR-aptamer

scientific article published on July 2003

In more languages

Statements

scholarly article

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

Molecular dynamics reveals the stabilizing role of loop closing residues in kissing interactions: comparison between TAR-TAR* and TAR-aptamer (English)

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

author name string

François Beaurain

1

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

Carmelo Di Primo

2

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

Jean Jacques Toulmé

3

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

Michel Laguerre

4

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

language of work or name

0 references

publication date

1 July 2003

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

Nucleic Acids Research

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

31

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

14

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

4275-4284

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

RNA loop-loop interactions as dynamic functional motifs.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165981

22 September 2017

The non-Watson-Crick base pairs and their associated isostericity matrices

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165981

22 September 2017

A new peculiar DNA structure: NMR solution structure of a DNA kissing complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165981

22 September 2017

Molecular dynamics simulation of nucleic acids: successes, limitations, and promise

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165981

22 September 2017

The IMB Jena Image Library of Biological Macromolecules: 2002 update

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165981

22 September 2017

Crystal structures of coaxially stacked kissing complexes of the HIV-1 RNA dimerization initiation site

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165981

22 September 2017

Molecular dynamics and binding specificity analysis of the bovine immunodeficiency virus BIV Tat-TAR complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165981

22 September 2017

Molecular dynamics studies of the HIV-1 TAR and its complex with argininamide

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165981

22 September 2017

Molecular dynamics simulation of nucleic acids

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165981

22 September 2017

Convergence of natural and artificial evolution on an RNA loop-loop interaction: the HIV-1 dimerization initiation site

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165981

22 September 2017

NMR characterization of a kissing complex formed between the TAR RNA element of HIV-1 and a DNA aptamer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165981

22 September 2017

The complete atomic structure of the large ribosomal subunit at 2.4 A resolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165981

22 September 2017

A retroviral RNA kissing complex containing only two G⋅C base pairs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165981

22 September 2017

A-form conformational motifs in ligand-bound DNA structures

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165981

22 September 2017

Is a closing "GA pair" a rule for stable loop-loop RNA complexes?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165981

22 September 2017

Structure of the S15,S6,S18-rRNA complex: assembly of the 30S ribosome central domain

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165981

22 September 2017

In vitro selection identifies key determinants for loop-loop interactions: RNA aptamers selective for the TAR RNA element of HIV-1.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165981

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165981

22 September 2017

DNA aptamers selected against the HIV-1 trans-activation-responsive RNA element form RNA-DNA kissing complexes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165981

22 September 2017

Mapping of a protein-RNA kissing hairpin interface: Rom and Tar-Tar*

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165981

22 September 2017

The solution structure of an RNA loop-loop complex: the ColE1 inverted loop sequence

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165981

22 September 2017

Structure of the dimer initiation complex of HIV-1 genomic RNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165981

22 September 2017

The structure of an RNA "kissing" hairpin complex of the HIV TAR hairpin loop and its complement

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165981

22 September 2017

RNA tertiary structure mediation by adenosine platforms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165981

22 September 2017

Characterization of a "kissing" hairpin complex derived from the human immunodeficiency virus genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165981

22 September 2017

Bent helix formation between RNA hairpins with complementary loops

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165981

22 September 2017

Control of primer formation for ColE1 plasmid replication: conformational change of the primer transcript

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165981

22 September 2017

Structure and dimerization of HIV-1 kissing loop aptamers

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165981

17 June 2018

tRNA prefers to kiss

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165981

17 June 2018

Non-canonical interactions in a kissing loop complex: the dimerization initiation site of HIV-1 genomic RNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165981

17 June 2018

Complex formed by complementary RNA stem-loops and its stabilization by a protein: Function of ColE1 Rom protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=165981

20 August 2018

Molecular modeling and dynamics studies of HIV-1 kissing loop structures

1 reference

https://pubmed.ncbi.nlm.nih.gov/12853646

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Control of ColE1 plasmid replication: binding of RNA I to RNA II and inhibition of primer formation

1 reference

https://pubmed.ncbi.nlm.nih.gov/12853646

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Complexes formed by complementary RNA stem-loops. Their formations, structures and interaction with ColE1 Rom protein

1 reference

https://pubmed.ncbi.nlm.nih.gov/12853646

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Solution structure of (rGGCAGGCC)2 by two-dimensional NMR and the iterative relaxation matrix approach

1 reference

https://pubmed.ncbi.nlm.nih.gov/12853646

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1093/NAR/GKG467

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

ResearchGate publication ID

0 references

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