(Q35012331)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12458085%20AND%20SRC:MED&resulttype=core&format=json

15 December 2019

review article

1 reference

title

RNA loop-loop interactions as dynamic functional motifs (English)

1 reference

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15 December 2019

2

1 reference

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15 December 2019

author name string

Christine Brunel

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12458085%20AND%20SRC:MED&resulttype=core&format=json

15 December 2019

Pascale Romby

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12458085%20AND%20SRC:MED&resulttype=core&format=json

15 December 2019

Chantal Ehresmann

series ordinal

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12458085%20AND%20SRC:MED&resulttype=core&format=json

15 December 2019

publication date

1 September 2002

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12458085%20AND%20SRC:MED&resulttype=core&format=json

15 December 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12458085%20AND%20SRC:MED&resulttype=core&format=json

15 December 2019

volume

84

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12458085%20AND%20SRC:MED&resulttype=core&format=json

15 December 2019

page(s)

925-944

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12458085%20AND%20SRC:MED&resulttype=core&format=json

15 December 2019

issue

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12458085%20AND%20SRC:MED&resulttype=core&format=json

Hierarchy and dynamics of RNA folding

15 December 2019

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New loop-loop tertiary interactions in self-splicing introns of subgroup IC and ID: a complete 3D model of the Tetrahymena thermophila ribozyme

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Intramolecular secondary structure rearrangement by the kissing interaction of the Neurospora VS ribozyme

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Rapid formation of a solvent-inaccessible core in the Neurospora Varkud satellite ribozyme

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7 January 2021

The anticodon-anticodon complex

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7 January 2021

Studies of the complex between transfer RNAs with complementary anticodons. I. Origins of enhanced affinity between complementary triplets

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7 January 2021

Codon:anticodon and anticodon:anticodon interaction: evaluation of equilibrium and kinetic parameters of complexes involving a g:u wobble

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7 January 2021

Temperature jump relaxation studies on the interactions between transfer RNAs with complementary anticodons. The effect of modified bases adjacent to the anticodon triplet.

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7 January 2021

Anticodon-anticodon interactions in solution. Studies of the self-association of yeast or Escherichia coli tRNAAsp and of their interactions with Escherichia coli tRNAVal

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7 January 2021

The structure of yeast tRNA(Asp). A model for tRNA interacting with messenger RNA

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7 January 2021

Crystallographic refinement of yeast aspartic acid transfer RNA

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7 January 2021

Antisense RNA control in bacteria, phages, and plasmids

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7 January 2021

Antisense RNA regulation in prokaryotes: rapid RNA/RNA interaction facilitated by a general U-turn loop structure

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7 January 2021

Insertion sequence IS10 anti-sense pairing initiates by an interaction between the 5' end of the target RNA and a loop in the anti-sense RNA.

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7 January 2021

Identification of the primary site of the human immunodeficiency virus type 1 RNA dimerization in vitro

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7 January 2021

Dimerization of retroviral genomic RNAs: structural and functional implications

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7 January 2021

Structural basis for the specificity of the initiation of HIV-1 reverse transcription

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7 January 2021

Nucleotide sequences within the U5 region of the viral RNA genome are the major determinants for an human immunodeficiency virus type 1 to maintain a primer binding site complementary to tRNA(His).

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7 January 2021

Genetic evidence of the interaction between tRNA(Lys,3) and U5 facilitating efficient initiation of reverse transcription by human immunodeficiency virus type 1.

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7 January 2021

Structural features in the HIV-1 repeat region facilitate strand transfer during reverse transcription

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7 January 2021

DNA aptamers selected against the HIV-1 trans-activation-responsive RNA element form RNA-DNA kissing complexes

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7 January 2021

In vitro selection identifies key determinants for loop-loop interactions: RNA aptamers selective for the TAR RNA element of HIV-1.

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7 January 2021

RNA-RNA interaction is required for the formation of specific bicoid mRNA 3' UTR-STAUFEN ribonucleoprotein particles.

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7 January 2021

Dimerization of the 3'UTR of bicoid mRNA involves a two-step mechanism

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7 January 2021

A dimer as a building block in assembling RNA. A hexamer that gears bacterial virus phi29 DNA-translocating machinery

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7 January 2021

Inter-RNA interaction of phage phi29 pRNA to form a hexameric complex for viral DNA transportation.

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7 January 2021

Convergence of natural and artificial evolution on an RNA loop-loop interaction: the HIV-1 dimerization initiation site

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7 January 2021

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Small RNAs in Escherichia coli.

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Antisense RNAs everywhere?

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7 January 2021

Novel small RNA-encoding genes in the intergenic regions of Escherichia coli

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7 January 2021

Identification of novel small RNAs using comparative genomics and microarrays

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7 January 2021

Identification of novel genes coding for small expressed RNAs

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7 January 2021

An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans

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7 January 2021

RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse

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7 January 2021

An extensive class of small RNAs in Caenorhabditis elegans

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7 January 2021

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7 January 2021

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7 January 2021

A small, stable RNA induced by oxidative stress: role as a pleiotropic regulator and antimutator.

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7 January 2021

Control of ColE1 plasmid replication: binding of RNA I to RNA II and inhibition of primer formation

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7 January 2021

Control of ColE1 plasmid replication. Interaction of Rom protein with an unstable complex formed by RNA I and RNA II

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7 January 2021

Control of ColE1 plasmid replication. Intermediates in the binding of RNA I and RNA II

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7 January 2021

Copy number control of IncIalpha plasmid ColIb-P9 by competition between pseudoknot formation and antisense RNA binding at a specific RNA site

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7 January 2021

Mechanism of binding of the antisense and target RNAs involved in the regulation of IncB plasmid replication

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7 January 2021

U-turns and regulatory RNAs

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7 January 2021

Four-way junctions in antisense RNA-mRNA complexes involved in plasmid replication control: a common theme?

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7 January 2021

The effect of loop size in antisense and target RNAs on the efficiency of antisense RNA control

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7 January 2021

Kissing and RNA stability in antisense control of plasmid replication

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7 January 2021

Structural analysis of late intermediate complex formed between plasmid ColIb-P9 Inc RNA and its target RNA. How does a single antisense RNA repress translation of two genes at different rates?

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7 January 2021

Complexes formed by complementary RNA stem-loops. Their formations, structures and interaction with ColE1 Rom protein

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7 January 2021

Control of cole 1 plasmid replication: Enhancement of binding of RNA I to the primer transcript by the rom protein

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7 January 2021

Complex formed by complementary RNA stem-loops and its stabilization by a protein: Function of ColE1 Rom protein

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7 January 2021

The solution structure of an RNA loop-loop complex: the ColE1 inverted loop sequence

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7 January 2021

Association of an RNA kissing complex analyzed using 2-aminopurine fluorescence

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7 January 2021

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7 January 2021

The FinOP repressor system of plasmid R1: analysis of the antisense RNA control of traJ expression and conjugative DNA transfer.

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7 January 2021

Repression and derepression of conjugation of plasmid R1 by wild-type and mutated finP antisense RNA

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7 January 2021

Degradation of FinP antisense RNA from F-like plasmids: the RNA-binding protein, FinO, protects FinP from ribonuclease E

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7 January 2021

The FinO protein of IncF plasmids binds FinP antisense RNA and its target, traJ mRNA, and promotes duplex formation.

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7 January 2021

Crystal structure of the bacterial conjugation repressor finO

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7 January 2021

The sites of action of the two copy number control functions of plasmid R1

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7 January 2021

Control of replication of bacterial plasmids: Genetics, molecular biology, and physiology of the plasmid R1 system

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7 January 2021

Replication control of plasmid R1: disruption of an inhibitory RNA structure that sequesters the repA ribosome-binding site permits tap-independent RepA synthesis

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7 January 2021

Antisense RNA control of plasmid R1 replication. The dominant product of the antisense rna-mrna binding is not a full RNA duplex.

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7 January 2021

Structural analysis of an RNA molecule involved in replication control of plasmid R1

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7 January 2021

Secondary structure analysis of the RepA mRNA leader transcript involved in control of replication of plasmid R1.

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7 January 2021

An unusual structure formed by antisense-target RNA binding involves an extended kissing complex with a four-way junction and a side-by-side helical alignment

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7 January 2021

Progression of a loop-loop complex to a four-way junction is crucial for the activity of a regulatory antisense RNA

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7 January 2021

Structural basis for binding of the plasmid ColIb-P9 antisense Inc RNA to its target RNA with the 5'-rUUGGCG-3' motif in the loop sequence

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7 January 2021

Bulged-out nucleotides in an antisense RNA are required for rapid target RNA binding in vitro and inhibition in vivo

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7 January 2021

Real time kinetic studies of the interaction between folded antisense and target RNAs using surface plasmon resonance

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7 January 2021

Bulged residues promote the progression of a loop-loop interaction to a stable and inhibitory antisense-target RNA complex

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7 January 2021

Interaction between the antisense and target RNAs involved in the regulation of IncB plasmid replication

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7 January 2021

The OxyS regulatory RNA represses rpoS translation and binds the Hfq (HF-I) protein

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7 January 2021

The Escherichia coli OxyS regulatory RNA represses fhlA translation by blocking ribosome binding

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7 January 2021

The Sm-like Hfq protein increases OxyS RNA interaction with target mRNAs

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7 January 2021

fhlA repression by OxyS RNA: kissing complex formation at two sites results in a stable antisense-target RNA complex

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7 January 2021

Hfq: a bacterial Sm-like protein that mediates RNA-RNA interaction

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7 January 2021

tRNA-directed transcription antitermination

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7 January 2021

Processing of the leader mRNA plays a major role in the induction of thrS expression following threonine starvation in Bacillus subtilis.

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7 January 2021

tRNA determinants for transcription antitermination of the Bacillus subtilis tyrS gene.

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7 January 2021

Mapping of poly(A) sequences in the electron microscope reveals unusual structure of type C oncornavirus RNA molecules

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7 January 2021

High-molecular-weight RNAs of AKR, NZB, and wild mouse viruses and avian reticuloendotheliosis virus all have similar dimer structures

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7 January 2021

RD-114, baboon, and woolly monkey viral RNAs compared in size and structure

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7 January 2021

Secondary structural features in the 70S RNAs of Moloney murine leukemia and Rous sarcoma viruses as observed by electron microscopy.

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7 January 2021

An analytical study of the dimerization of in vitro generated RNA of Moloney murine leukemia virus MoMuLV.

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7 January 2021

Cis elements and trans-acting factors involved in the RNA dimerization of the human immunodeficiency virus HIV-1.

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7 January 2021

A study of the dimer formation of Rous sarcoma virus RNA and of its effect on viral protein synthesis in vitro

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7 January 2021

HIV-1 genome dimerization: formation kinetics and thermal stability of dimeric HIV-1Lai RNAs are not improved by the 1-232 and 296-790 regions flanking the kissing-loop domain

1 reference

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7 January 2021

Kissing-loop model of HIV-1 genome dimerization: HIV-1 RNAs can assume alternative dimeric forms, and all sequences upstream or downstream of hairpin 248-271 are dispensable for dimer formation

1 reference

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7 January 2021

Requirements for kissing-loop-mediated dimerization of human immunodeficiency virus RNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

Dimerization of HIV-1Lai RNA at low ionic strength. An autocomplementary sequence in the 5' leader region is evidenced by an antisense oligonucleotide

1 reference

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7 January 2021

A 19-nucleotide sequence upstream of the 5' major splice donor is part of the dimerization domain of human immunodeficiency virus 1 genomic RNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

Evidence that a kissing loop structure facilitates genomic RNA dimerisation in HIV-1.

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7 January 2021

Functional analysis of the core human immunodeficiency virus type 1 packaging signal in a permissive cell line

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https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

Position dependence of functional hairpins important for human immunodeficiency virus type 1 RNA encapsidation in vivo

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

Impact of human immunodeficiency virus type 1 RNA dimerization on viral infectivity and of stem-loop B on RNA dimerization and reverse transcription and dissociation of dimerization from packaging

1 reference

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7 January 2021

A loop-loop "kissing" complex is the essential part of the dimer linkage of genomic HIV-1 RNA

1 reference

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7 January 2021

Non-canonical interactions in a kissing loop complex: the dimerization initiation site of HIV-1 genomic RNA.

1 reference

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7 January 2021

Variant effects of non-native kissing-loop hairpin palindromes on HIV replication and HIV RNA dimerization: role of stem-loop B in HIV replication and HIV RNA dimerization

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7 January 2021

Structure and dimerization of HIV-1 kissing loop aptamers

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7 January 2021

Crystal structures of coaxially stacked kissing complexes of the HIV-1 RNA dimerization initiation site

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7 January 2021

The dimer initiation site hairpin mediates dimerization of the human immunodeficiency virus, type 2 RNA genome

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

Identification of thein VitroHIV-2/SIV RNA Dimerization Site Reveals Striking Differences with HIV-1

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

Sequences involved in the dimerisation of human T cell leukaemia virus type-1 RNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

Oligonucleotide mapping of the core genomic RNA dimer linkage in human T-cell leukaemia virus type-1.

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

Palindromic sequence plays a critical role in human foamy virus dimerization

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

Identification of sites that act together to direct dimerization of human foamy virus RNA in vitro.

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

Characterization of loose and tight dimer forms of avian leukosis virus RNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

In vivo selection of Rous sarcoma virus mutants with randomized sequences in the packaging signal

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

A short autocomplementary sequence plays an essential role in avian sarcoma-leukosis virus RNA dimerization.

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

Bipartite signal for genomic RNA dimerization in Moloney murine leukemia virus

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

Dimerization of MoMuLV genomic RNA: redefinition of the role of the palindromic stem-loop H1 (278-303) and new roles for stem-loops H2 (310-352) and H3 (355-374)

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

A model of PSI dimerization: destabilization of the C278-G303 stem-loop by the nucleocapsid protein (NCp10) of MoMuLV.

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

A short autocomplementary sequence in the 5' leader region is responsible for dimerization of MoMuLV genomic RNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

Spontaneous dimerization of retroviral MoMuLV RNA

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

Effect of dimerization on the conformation of the encapsidation Psi domain of Moloney murine leukemia virus RNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

A retroviral RNA kissing complex containing only two G⋅C base pairs

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

Dimerization of HIV-1 genomic RNA of subtypes A and B: RNA loop structure and magnesium binding

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

Is a closing "GA pair" a rule for stable loop-loop RNA complexes?

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

Dimer initiation sequence of HIV-1Lai genomic RNA: NMR solution structure of the extended duplex

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

Structure of the dimer initiation complex of HIV-1 genomic RNA

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

NMR structure of the mature dimer initiation complex of HIV-1 genomic RNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

The crystal structure of the dimerization initiation site of genomic HIV-1 RNA reveals an extended duplex with two adenine bulges

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

The HIV-1(Lai) RNA dimerization. Thermodynamic parameters associated with the transition from the kissing complex to the extended dimer.

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

Structural requirement for the two-step dimerization of human immunodeficiency virus type 1 genome

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

NCp7 activates HIV-1Lai RNA dimerization by converting a transient loop-loop complex into a stable dimer

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

A kissing complex together with a stable dimer is involved in the HIV-1Lai RNA dimerization process in vitro

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

HIV-1 nucleocapsid protein induces "maturation" of dimeric retroviral RNA in vitro

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

Dimerization of human immunodeficiency virus type 1 RNA involves sequences located upstream of the splice donor site.

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

HIV-1 genome dimerization: kissing-loop hairpin dictates whether nucleotides downstream of the 5' splice junction contribute to loose and tight dimerization of human immunodeficiency virus RNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

Functional sites in the 5' region of human immunodeficiency virus type 1 RNA form defined structural domains.

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

Role of the gag polyprotein precursor in packaging and maturation of Rous sarcoma virus genomic RNA

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

Maturation of dimeric viral RNA of Moloney murine leukemia virus.

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

The genomic RNA in Ty1 virus-like particles is dimeric

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

The human immunodeficiency virus type 1 Gag polyprotein has nucleic acid chaperone activity: possible role in dimerization of genomic RNA and placement of tRNA on the primer binding site

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

Maintenance of the Gag/Gag-Pol ratio is important for human immunodeficiency virus type 1 RNA dimerization and viral infectivity

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

cis-acting sequences responsible for anterior localization of bicoid mRNA in Drosophila embryos

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

Staufen protein associates with the 3'UTR of bicoid mRNA to form particles that move in a microtubule-dependent manner.

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

TectoRNA: modular assembly units for the construction of RNA nano-objects

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

Solution studies of the dimerization initiation site of HIV-1 genomic RNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

RNA localization in development.

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

Neuronal RNA granules: a link between RNA localization and stimulation-dependent translation.

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

Structure of viral connectors and their function in bacteriophage assembly and DNA packaging

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

Phi29 family of phages

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

Initiation events in in-vitro packaging of bacteriophage phi 29 DNA-gp3

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

Prohead and DNA-gp3-dependent ATPase activity of the DNA packaging protein gp16 of bacteriophage phi 29

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

Characterization of the small RNA of the bacteriophage phi 29 DNA packaging machine

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

A small viral RNA is required for in vitro packaging of bacteriophage phi 29 DNA

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

Sequential action of six virus-encoded DNA-packaging RNAs during phage phi29 genomic DNA translocation.

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

Detailed architecture of a DNA translocating machine: the high-resolution structure of the bacteriophage phi29 connector particle

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

Structure of the bacteriophage phi29 DNA packaging motor

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

Mapping the inter-RNA interaction of bacterial virus phi29 packaging RNA by site-specific photoaffinity cross-linking

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

Inhibition of ColE1 RNA primer formation by a plasmid-specified small RNA

1 reference

https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901401-3

7 January 2021

10.1016/S0300-9084(02)01401-3

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12458085%20AND%20SRC:MED&resulttype=core&format=json

15 December 2019

1 reference