(Q39805999)

14 September 2017

Measuring guide-tree dependency of inferred gaps in progressive aligners (English)

1 reference

Salvador Capella-Gutierrez

14 September 2017

series ordinal

1

1 reference

14 September 2017

2

1 reference

PMC publication ID

3624810

14 September 2017

language of work or name

English

0 references

publication date

23 February 2013

1 reference

14 September 2017

1 reference

14 September 2017

29

1 reference

14 September 2017

8

1 reference

14 September 2017

1011-1017

1 reference

Creative Commons Attribution 3.0 Unported

14 September 2017

start time

2 October 2016

1 reference

April 2023 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Measuring the distance between multiple sequence alignments.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624810

PhylomeDB v3.0: an expanding repository of genome-wide collections of trees, alignments and phylogeny-based orthology and paralogy predictions

22 September 2017

1 reference

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New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624810

ETE: a python Environment for Tree Exploration

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624810

Phylogenetic inference under varying proportions of indel-induced alignment gaps

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624810

Upcoming challenges for multiple sequence alignment methods in the high-throughput era

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624810

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624810

The tree versus the forest: the fungal tree of life and the topological diversity within the yeast phylome

22 September 2017

1 reference

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Phylogeny-aware gap placement prevents errors in sequence alignment and evolutionary analysis

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624810

Recent developments in the MAFFT multiple sequence alignment program

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624810

Clustal W and Clustal X version 2.0

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624810

Recent evolutions of multiple sequence alignment algorithms

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624810

Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624810

M-Coffee: combining multiple sequence alignment methods with T-Coffee

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624810

Gaps in structurally similar proteins: towards improvement of multiple sequence alignment

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624810

T-Coffee: A novel method for fast and accurate multiple sequence alignment

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624810

Darwin v. 2.0: an interpreted computer language for the biosciences

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624810

Phylogenetic assessment of alignments reveals neglected tree signal in gaps

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624810

SATe-II: very fast and accurate simultaneous estimation of multiple sequence alignments and phylogenetic trees.

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624810

Mind the gaps: evidence of bias in estimates of multiple sequence alignments.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624810

Heads or tails: a simple reliability check for multiple sequence alignments

20 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23435067

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/BIOINFORMATICS/BTT095

1 reference

journals/bioinformatics/Capella-GutierrezG13

14 September 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

PMC publication ID

3624810

14 September 2017

PubMed publication ID

23435067

1 reference

PMC publication ID

3624810