(Q51482729)

5 April 2018

title

SATe-II: very fast and accurate simultaneous estimation of multiple sequence alignments and phylogenetic trees. (English)

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Tandy Warnow

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object named as

Tandy J Warnow

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C. Randal Linder

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object named as

C Randal Linder

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author name string

Kevin Liu

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Serita M Nelesen

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Jiaye Yu

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Alexandros P Stamatakis

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publication date

1 December 2011

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5 April 2018

published in

Systematic Biology

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volume

61

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page(s)

90-106

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issue

1

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The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs

cites work

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https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYR095

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MUSCLE: multiple sequence alignment with high accuracy and high throughput

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Simultaneous statistical multiple alignment and phylogeny reconstruction.

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A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

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Unified approach to alignment and phylogenies

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An Empirical Test of Bootstrapping as a Method for Assessing Confidence in Phylogenetic Analysis

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Recent developments in the MAFFT multiple sequence alignment program

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Rapid and accurate large-scale coestimation of sequence alignments and phylogenetic trees

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Bayesian coestimation of phylogeny and sequence alignment

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RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

21 January 2018

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CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

21 January 2018

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21 January 2018

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Links between maximum likelihood and maximum parsimony under a simple model of site substitution

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Identifiers

DOI

10.1093/SYSBIO/SYR095

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5 April 2018

PubMed ID

22139466

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5 April 2018