(Q39843802)

English

Genome-wide localization analysis of a complete set of Tafs reveals a specific effect of the taf1 mutation on Taf2 occupancy and provides indirect evidence for different TFIID conformations at different promoters

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scholarly article

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Europe PubMed Central

PMC publication ID

15 September 2017

Genome-wide localization analysis of a complete set of Tafs reveals a specific effect of the taf1 mutation on Taf2 occupancy and provides indirect evidence for different TFIID conformations at different promoters (English)

1 reference

Europe PubMed Central

PMC publication ID

15 September 2017

Katsuhiko Shirahige

3

object named as

Katsuhiko Shirahige

1 reference

Europe PubMed Central

15 September 2017

PMC publication ID

author name string

Kazushige Ohtsuki

1

1 reference

Europe PubMed Central

PMC publication ID

15 September 2017

Koji Kasahara

2

1 reference

Europe PubMed Central

PMC publication ID

15 September 2017

Tetsuro Kokubo

4

1 reference

Europe PubMed Central

PMC publication ID

15 September 2017

language of work or name

1 reference

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publication date

21 December 2009

1 reference

Europe PubMed Central

PMC publication ID

15 September 2017

Nucleic Acids Research

1 reference

Europe PubMed Central

PMC publication ID

15 September 2017

38

1 reference

Europe PubMed Central

PMC publication ID

15 September 2017

6

1 reference

Europe PubMed Central

PMC publication ID

15 September 2017

1805-1820

1 reference

Europe PubMed Central

PMC publication ID

15 September 2017

Structures of three distinct activator-TFIID complexes

1 reference

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DNA Binding Site Sequence Directs Glucocorticoid Receptor Structure and Activity

1 reference

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Recent advances in understanding the structure and function of general transcription factor TFIID.

1 reference

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Mapping the initiator binding Taf2 subunit in the structure of hydrated yeast TFIID

1 reference

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22 September 2017

Widespread bidirectional promoters are the major source of cryptic transcripts in yeast

1 reference

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Bidirectional promoters generate pervasive transcription in yeast

1 reference

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Anc1, a protein associated with multiple transcription complexes, is involved in postreplication repair pathway in S. cerevisiae.

1 reference

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22 September 2017

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1 reference

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22 September 2017

Dividing the workload at a eukaryotic replication fork

1 reference

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22 September 2017

TBP, Mot1, and NC2 establish a regulatory circuit that controls DPE-dependent versus TATA-dependent transcription

1 reference

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22 September 2017

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1 reference

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22 September 2017

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1 reference

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22 September 2017

TFIID component TAF7 functionally interacts with both TFIIH and P-TEFb

1 reference

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22 September 2017

Saccharomyces cerevisiae HMO1 interacts with TFIID and participates in start site selection by RNA polymerase II.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2847235

22 September 2017

The dual control of TFIIB recruitment by NC2 is gene specific

1 reference

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22 September 2017

On a roll for new TRF targets.

1 reference

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22 September 2017

TBP homologues in embryo transcription: who does what?

1 reference

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22 September 2017

The SAGA continues: expanding the cellular role of a transcriptional co-activator complex

1 reference

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22 September 2017

Assembly of regulatory factors on rRNA and ribosomal protein genes in Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2847235

22 September 2017

Global distribution of negative cofactor 2 subunit-alpha on human promoters

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2847235

22 September 2017

NuA4-directed chromatin transactions throughout the Saccharomyces cerevisiae genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2847235

22 September 2017

A TATA binding protein regulatory network that governs transcription complex assembly.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2847235

22 September 2017

Identification of a small TAF complex and its role in the assembly of TAF-containing complexes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2847235

22 September 2017

Multi-tasking on chromatin with the SAGA coactivator complexes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2847235

22 September 2017

Identification of novel functional TBP-binding sites and general factor repertoires

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2847235

22 September 2017

Yeast TFIID serves as a coactivator for Rap1p by direct protein-protein interaction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2847235

22 September 2017

Full and partial genome-wide assembly and disassembly of the yeast transcription machinery in response to heat shock

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2847235

22 September 2017

The general transcription machinery and general cofactors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2847235

22 September 2017

Cryo-electron microscopy studies of human TFIID: conformational breathing in the integration of gene regulatory cues

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2847235

22 September 2017

TAF7: a possible transcription initiation check-point regulator

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2847235

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The dynamics of chromatin remodeling at promoters

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2847235

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A high-resolution map of active promoters in the human genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2847235

22 September 2017

Mapping and functional characterization of the TAF11 interaction with TFIIA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2847235

22 September 2017

Efficient Binding of NC2⋅TATA-binding Protein to DNA in the Absence of TATA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2847235

22 September 2017

Changes in genomewide occupancy of core transcriptional regulators during heat stress

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2847235

22 September 2017

Global role of TATA box-binding protein recruitment to promoters in mediating gene expression profiles

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2847235

22 September 2017

Regulatory diversity among metazoan co-activator complexes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2847235

22 September 2017

Structure and mechanism of the RNA polymerase II transcription machinery

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2847235

22 September 2017

The RNA polymerase III transcriptome revealed by genome-wide localization and activity-occupancy relationships.

1 reference

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22 September 2017

Genome-wide location of yeast RNA polymerase III transcription machinery

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2847235

22 September 2017

Systematic analysis of essential yeast TAFs in genome-wide transcription and preinitiation complex assembly

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2847235

22 September 2017

SWI/SNF-dependent chromatin remodeling of RNR3 requires TAF(II)s and the general transcription machinery

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2847235

22 September 2017

The NC2 alpha and beta subunits play different roles in vivo

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2847235

22 September 2017

Differential requirement of SAGA components for recruitment of TATA-box-binding protein to promoters in vivo

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2847235

22 September 2017

Proteomics of the eukaryotic transcription machinery: identification of proteins associated with components of yeast TFIID by multidimensional mass spectrometry

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2847235

22 September 2017

Exchange of RNA polymerase II initiation and elongation factors during gene expression in vivo

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2847235

22 September 2017

Distinct mutations in yeast TAF(II)25 differentially affect the composition of TFIID and SAGA complexes as well as global gene expression patterns.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2847235

22 September 2017

Crystal structure of negative cofactor 2 recognizing the TBP-DNA transcription complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2847235

22 September 2017

Redundant roles for the TFIID and SAGA complexes in global transcription

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2847235

22 September 2017

TAF-Containing and TAF-independent forms of transcriptionally active TBP in vivo.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2847235

22 September 2017

Distinct classes of yeast promoters revealed by differential TAF recruitment

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2847235

22 September 2017

Identification and cloning of two histone fold motif-containing subunits of HeLa DNA polymerase epsilon

1 reference

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22 September 2017

Impaired core promoter recognition caused by novel yeast TAF145 mutations can be restored by creating a canonical TATA element within the promoter region of the TUB2 gene

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2847235

22 September 2017

The Spt components of SAGA facilitate TBP binding to a promoter at a post-activator-binding step in vivo

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2847235

22 September 2017

DNA binding site selection by RNA polymerase II TAFs: a TAF(II)250-TAF(II)150 complex recognizes the initiator

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2847235

22 September 2017

Dissecting the regulatory circuitry of a eukaryotic genome

1 reference

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22 September 2017

Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae

1 reference

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22 September 2017

The yeast TAF145 inhibitory domain and TFIIA competitively bind to TATA-binding protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2847235

22 September 2017

Considerations of transcriptional control mechanisms: do TFIID-core promoter complexes recapitulate nucleosome-like functions?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2847235

22 September 2017

PCR-synthesis of marker cassettes with long flanking homology regions for gene disruptions in S. cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2847235

22 September 2017

Human TAFII30 is present in a distinct TFIID complex and is required for transcriptional activation by the estrogen receptor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2847235

22 September 2017

Activation of class II gene transcription by regulatory factors is potentiated by a novel activity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2847235

22 September 2017

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1 reference

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22 September 2017

Autonomous function of the amino-terminal inhibitory domain of TAF1 in transcriptional regulation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2847235

25 September 2017

Global position and recruitment of HATs and HDACs in the yeast genome.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2847235

25 September 2017

Assembly of the isomerized TFIIA--TFIID--TATA ternary complex is necessary and sufficient for gene activation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2847235

17 June 2018

CIF, an essential cofactor for TFIID-dependent initiator function

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2847235

17 June 2018

A canonical promoter organization of the transcription machinery and its regulators in the Saccharomyces genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2847235

20 August 2018

Site-specific cross-linking of TBP in vivo and in vitro reveals a direct functional interaction with the SAGA subunit Spt3.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2847235

20 August 2018

Targeting a TAF to make muscle.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2847235

20 August 2018

Dissection of coactivator requirement at RNR3 reveals unexpected contributions from TFIID and SAGA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2847235

20 August 2018

ATAC is a double histone acetyltransferase complex that stimulates nucleosome sliding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2847235

20 August 2018

NC2 mobilizes TBP on core promoter TATA boxes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2847235

20 August 2018

Genomic approach for the understanding of dynamic aspect of chromosome behavior.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2847235

20 August 2018

Genome-wide relationships between TAF1 and histone acetyltransferases in Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2847235

20 August 2018

Genome-wide transcriptional dependence on TAF1 functional domains.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2847235

20 August 2018

One nucleotide in a kappaB site can determine cofactor specificity for NF-kappaB dimers

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2847235

20 August 2018

Identification and distinct regulation of yeast TATA box-containing genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2847235

20 August 2018

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2847235

20 August 2018

Identification of a novel TATA element-binding protein binding region at the N terminus of the Saccharomyces cerevisiae TAF1 protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2847235

20 August 2018

Activator-specific recruitment of TFIID and regulation of ribosomal protein genes in yeast

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2847235

20 August 2018

A unified nomenclature for TATA box binding protein (TBP)-associated factors (TAFs) involved in RNA polymerase II transcription

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2847235

20 August 2018

Selective recruitment of TAFs by yeast upstream activating sequences. Implications for eukaryotic promoter structure

1 reference

https://pubmed.ncbi.nlm.nih.gov/20026583

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A mechanism for TAFs in transcriptional activation: activation domain enhancement of TFIID-TFIIA--promoter DNA complex formation

1 reference

https://pubmed.ncbi.nlm.nih.gov/20026583

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Topology and reorganization of a human TFIID–promoter complex

1 reference

https://pubmed.ncbi.nlm.nih.gov/20026583

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1093/NAR/GKP1172

1 reference

Europe PubMed Central

PMC publication ID

15 September 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

15 September 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

15 September 2017

ResearchGate publication ID

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