(Q39940776)

English

The oriT region of the Agrobacterium tumefaciens Ti plasmid pTiC58 shares DNA sequence identity with the transfer origins of RSF1010 and RK2/RP4 and with T-region borders

scientific article published on October 1, 1992

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

15 September 2017

The oriT region of the Agrobacterium tumefaciens Ti plasmid pTiC58 shares DNA sequence identity with the transfer origins of RSF1010 and RK2/RP4 and with T-region borders (English)

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A1400174

22 September 2022

Agrobacterium tumefaciens

object named as

Agrobacterium tumefaciens

1 reference

based on heuristic

inferred from title

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A1400174

22 September 2022

sequence homology

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A1400174

22 September 2022

author name string

D. M. Cook

1

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A1400174

22 September 2022

S. K. Farrand

2

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A1400174

22 September 2022

language of work or name

1 reference

National Center for Biotechnology Information

PubMed publication ID

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=1400174

22 September 2022

publication date

1 October 1992

1 reference

Europe PubMed Central

PMC publication ID

15 September 2017

full work available at URL

http://jb.asm.org/cgi/content/abstract/174/19/6238

online access status

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A1400174

22 September 2022

https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/1400174/?tool=EBI

online access status

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A1400174

22 September 2022

https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/1400174/pdf/?tool=EBI

Portable Document Format

online access status

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A1400174

22 September 2022

https://europepmc.org/articles/PMC207693

online access status

content deliverer

Europe PubMed Central

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A1400174

22 September 2022

https://europepmc.org/articles/PMC207693?pdf=render

Portable Document Format

online access status

content deliverer

Europe PubMed Central

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A1400174

22 September 2022

Journal of Bacteriology

1 reference

Europe PubMed Central

PMC publication ID

15 September 2017

174

1 reference

Europe PubMed Central

PMC publication ID

15 September 2017

19

1 reference

Europe PubMed Central

PMC publication ID

15 September 2017

6238-6246

1 reference

Europe PubMed Central

PMC publication ID

15 September 2017

Thermosensitive step associated with transfer of the Ti plasmid during conjugation: Possible relation to transformation in crown gall

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=207693

22 September 2017

Agrobacterium tumefaciens Conn. II. Production of an antibiotic substance.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=207693

22 September 2017

Activity of the Agrobacterium T-DNA transfer machinery is affected by virB gene products

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=207693

22 September 2017

Broad host range DNA cloning system for gram-negative bacteria: construction of a gene bank of Rhizobium meliloti

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=207693

22 September 2017

Cloning of genes controlling alginate biosynthesis from a mucoid cystic fibrosis isolate of Pseudomonas aeruginosa.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=207693

22 September 2017

Location and nucleotide sequence of the transfer origin of the broad host range plasmid RK2

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=207693

22 September 2017

Wide host range cloning vectors: A cosmid clone bank of an Agrobacterium Ti plasmid

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=207693

22 September 2017

Processing of plasmid DNA during bacterial conjugation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=207693

22 September 2017

DNA isolated from Escherichia coli minicells mated with F+ cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=207693

22 September 2017

Agrobacterium tumefaciens DNA and PS8 Bacteriophage DNA Not Detected in Crown Gall Tumors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=207693

22 September 2017

Regulation of Ti plasmid virulence genes by a chromosomal locus of Agrobacterium tumefaciens

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=207693

22 September 2017

Association of the virD2 protein with the 5' end of T strands in Agrobacterium tumefaciens

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=207693

22 September 2017

Processing of the T-DNA of Agrobacterium tumefaciens generates border nicks and linear, single-stranded T-DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=207693

22 September 2017

Activity of T-DNA borders in plant cell transformation by mini-T plasmids

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=207693

22 September 2017

Characterization and mapping of the agrocinopine-agrocin 84 locus on the nopaline Ti plasmid pTiC58.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=207693

22 September 2017

Construction of an Agrobacterium tumefaciens C58 recA mutant

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=207693

22 September 2017

Characterization of conjugal transfer functions of Agrobacterium tumefaciens Ti plasmid pTiC58

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=207693

22 September 2017

Conjugative transfer of promiscuous IncP plasmids: interaction of plasmid-encoded products with the transfer origin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=207693

22 September 2017

In vitro assembly of relaxosomes at the transfer origin of plasmid RP4.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=207693

22 September 2017

Sequence identity in the nick regions of IncP plasmid transfer origins and T-DNA borders of Agrobacterium Ti plasmids

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=207693

22 September 2017

A segment of a plasmid gene required for conjugal transfer encodes a site-specific, single-strand DNA endonuclease and ligase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=207693

22 September 2017

Opine catabolism and conjugal transfer of the nopaline Ti plasmid pTiC58 are coordinately regulated by a single repressor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=207693

22 September 2017

Common sequence motifs in DNA relaxases and nick regions from a variety of DNA transfer systems

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=207693

22 September 2017

Acquisition of tumour-inducing ability by non-oncogenic agrobacteria as a result of plasmid transfer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=207693

22 September 2017

DNA sequencing with chain-terminating inhibitors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=207693

22 September 2017

Transfection and transformation of Agrobacterium tumefaciens

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=207693

25 September 2017

Mobilization of the non-conjugative plasmid RSF1010: a genetic and DNA sequence analysis of the mobilization region.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=207693

15 June 2018

The virD operon of Agrobacterium tumefaciens encodes a site-specific endonuclease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=207693

15 June 2018

Improved broad-host-range plasmids for DNA cloning in gram-negative bacteria.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=207693

15 June 2018

TraJ protein of plasmid RP4 binds to a 19-base pair invert sequence repetition within the transfer origin.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=207693

15 June 2018

The mobilization and origin of transfer regions of a Thiobacillus ferrooxidans plasmid: relatedness to plasmids RSF1010 and pSC101.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=207693

15 June 2018

Characteristics of the nopaline catabolic plasmid in Agrobacterium strains K84 and K1026 used for biological control of crown gall disease.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=207693

15 June 2018

Covalent association of the traI gene product of plasmid RP4 with the 5'-terminal nucleotide at the relaxation nick site.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=207693

15 June 2018

Agrobacterium plasmids encode structurally and functionally different loci for catabolism of agrocinopine-type opines

1 reference

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20 August 2018

A 38 base-pair segment of DNA is required in cis for conjugative mobilization of broad host-range plasmid R1162

1 reference

https://pubmed.ncbi.nlm.nih.gov/1400174

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular cloning of overlapping segments of the nopaline Ti-plasmid pTiC58 as a means to restriction endonuclease mapping

1 reference

https://pubmed.ncbi.nlm.nih.gov/1400174

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Physical mapping of DNA base sequence homologies between an octopine and a nopaline Ti plasmid of Agrobacterium tumefaciens

1 reference

https://pubmed.ncbi.nlm.nih.gov/1400174

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

System for DNA sequencing with resolution of up to 600 base pairs

1 reference

https://pubmed.ncbi.nlm.nih.gov/1400174

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based on heuristic

inferred from PubMed ID database lookup

Site-Specific Nick in the T-DNA Border Sequence as a Result of Agrobacterium vir Gene Expression

1 reference

https://pubmed.ncbi.nlm.nih.gov/1400174

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Right 25 bp terminus sequence of the nopaline T-DNA is essential for and determines direction of DNA transfer from agrobacterium to the plant genome

1 reference

https://pubmed.ncbi.nlm.nih.gov/1400174

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mobilization of the non-conjugative plasmid RSF1010: a genetic analysis of its origin of transfer

1 reference

https://pubmed.ncbi.nlm.nih.gov/1400174

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Incompatibility between a Rhizobium Sym plasmid and a Ri plasmid of Agrobacterium

1 reference

https://pubmed.ncbi.nlm.nih.gov/1400174

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Agrobacterium tumefaciens and the susceptible plant cell: a novel adaptation of extracellular recognition and DNA conjugation

1 reference

https://pubmed.ncbi.nlm.nih.gov/1400174

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Ti plasmids of Agrobacterium as conjugative plasmids

1 reference

https://pubmed.ncbi.nlm.nih.gov/1400174

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1128/JB.174.19.6238-6246.1992

1 reference

Europe PubMed Central

PMC publication ID

15 September 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

15 September 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

15 September 2017

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