(Q39991106)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22080547%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

title

Site-specific isotope labeling of long RNA for structural and mechanistic studies (English)

1 reference

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16 January 2020

0 references

10

1 reference

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16 January 2020

Yoshiya Ikawa

11

1 reference

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16 January 2020

Chojiro Kojima

12

1 reference

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16 January 2020

author name string

Ikumi Kawahara

1

1 reference

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16 January 2020

Kaichiro Haruta

2

1 reference

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16 January 2020

Yuta Ashihara

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22080547%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

Daichi Yamanaka

4

1 reference

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16 January 2020

Mituhiro Kuriyama

5

1 reference

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16 January 2020

Naoko Toki

6

1 reference

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16 January 2020

Yoshinori Kondo

7

1 reference

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16 January 2020

Kenta Teruya

8

1 reference

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16 January 2020

Junya Ishikawa

9

1 reference

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16 January 2020

Yoshiyuki Tanaka

13

1 reference

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16 January 2020

publication date

12 November 2011

1 reference

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16 January 2020

published in

Nucleic Acids Research

1 reference

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16 January 2020

volume

40

1 reference

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16 January 2020

issue

1

1 reference

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16 January 2020

page(s)

e7

1 reference

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Creative Commons Attribution-NonCommercial 3.0 Unported

16 January 2020

copyright license

start time

5 October 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Isotope labeling strategies for NMR studies of RNA

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Nitrogen-15 NMR spectroscopy of N-metallated nucleic acids: insights into 15N NMR parameters and N-metal bonds

22 September 2017

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Coordination environment of a site-bound metal ion in the hammerhead ribozyme determined by 15N and 2H ESEEM spectroscopy.

22 September 2017

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Tertiary contacts distant from the active site prime a ribozyme for catalysis

22 September 2017

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Detection of RNA nucleobase metalation by NMR spectroscopy

22 September 2017

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Biophysical and biochemical investigations of RNA catalysis in the hammerhead ribozyme

22 September 2017

1 reference

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Solution structure of an RNA duplex including a C-U base pair

22 September 2017

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Three metal ions at the active site of the Tetrahymena group I ribozyme

22 September 2017

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A simple and efficient method to reduce nontemplated nucleotide addition at the 3 terminus of RNAs transcribed by T7 RNA polymerase

22 September 2017

1 reference

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NMR scalar couplings across Watson-Crick base pair hydrogen bonds in DNA observed by transverse relaxation-optimized spectroscopy

22 September 2017

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NMR analysis of the hydrogen bonding interactions of the RNA-binding domains of the Drosophila sex-lethal protein with target RNA fragments with site-specific [3-15N]uridine substitutions

22 September 2017

1 reference

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Exocyclic amine of the conserved G.U pair at the cleavage site of the Tetrahymena ribozyme contributes to 5'-splice site selection and transition state stabilization

22 September 2017

1 reference

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Determining RNA solution structure by segmental isotopic labeling and NMR: application to Caenorhabditis elegans spliced leader RNA 1

22 September 2017

1 reference

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NMRPipe: a multidimensional spectral processing system based on UNIX pipes

22 September 2017

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Three-dimensional structure of a hammerhead ribozyme

22 September 2017

1 reference

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Specific interaction between the self-splicing RNA of Tetrahymena and its guanosine substrate: implications for biological catalysis by RNA.

22 September 2017

1 reference

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Self-splicing RNA: Autoexcision and autocyclization of the ribosomal RNA intervening sequence of tetrahymena

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245953

In vitro splicing of the ribosomal RNA precursor of Tetrahymena: involvement of a guanosine nucleotide in the excision of the intervening sequence

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245953

The Tetrahymena ribozyme acts like an RNA restriction endonuclease

22 September 2017

1 reference

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Molecular genetics of group I introns: RNA structures and protein factors required for splicing--a review

22 September 2017

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One binding site determines sequence specificity of Tetrahymena pre-rRNA self-splicing, trans-splicing, and RNA enzyme activity

22 September 2017

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Compensatory mutations demonstrate that P8 and P6 are RNA secondary structure elements important for processing of a group I intron

22 September 2017

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RNA structure, not sequence, determines the 5' splice-site specificity of a group I intron

22 September 2017

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Alteration of substrate specificity for the endoribonucleolytic cleavage of RNA by the Tetrahymena ribozyme

22 September 2017

1 reference

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Role of conserved sequence elements 9L and 2 in self-splicing of the Tetrahymena ribosomal RNA precursor

22 September 2017

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Self-splicing of group I introns

22 September 2017

1 reference

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Mutations in a nonconserved sequence of the Tetrahymena ribozyme increase activity and specificity

22 September 2017

1 reference

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Preparation of isotopically labeled ribonucleotides for multidimensional NMR spectroscopy of RNA.

22 September 2017

1 reference

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Preparation of 13C and 15N labelled RNAs for heteronuclear multi-dimensional NMR studies

22 September 2017

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A region of group I introns that contains universally conserved residues but is not essential for self-splicing

22 September 2017

1 reference

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Preparation of isotopically enriched RNAs for heteronuclear NMR.

22 September 2017

1 reference

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The guanosine binding site of the Tetrahymena ribozyme

17 June 2018

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RNA GG x UU motif binds K+ but not Mg2+.

17 June 2018

1 reference

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Characterization of the cation and temperature dependence of DNA quadruplex hydrogen bond properties using high-resolution NMR.

20 August 2018

1 reference

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Designed structural-rearrangement of an active group I ribozyme

20 August 2018

1 reference

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NMR study of 100 kDa HCV IRES RNA using segmental isotope labeling

20 August 2018

1 reference

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Identification of the metal ion binding site on an RNA motif from hammerhead ribozymes using (15)N NMR spectroscopy

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245953

A DFT study of the interresidue dependencies of scalar J-coupling and magnetic shielding in the hydrogen-bonding regions of a DNA triplex

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245953

Enzymatic activity of the conserved core of a group I self-splicing intron

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245953

The mechanism of adenosine to inosine conversion by the double-stranded RNA unwinding/modifying activity: a high-performance liquid chromatography-mass spectrometry analysis

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245953

In vitro splicing of the ribosomal RNA precursor of tetrahymena: Involvement of a guanosine nucleotide in the excision of the intervening sequence

20 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKR951

Three-dimensional heteronuclear NMR studies of RNA

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKR951

Making ends meet: a model for RNA splicing in fungal mitochondria

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKR951

Synthesis of 5-substituted [N3-15N]-pyrimidine nucleosides: Developing model systems for NMR studies of substituent effects on the N-H...N hydrogen bond in duplex DNA

21 January 2018

1 reference

12 December 2020

Group I intron self-splicing with adenosine: evidence for a single nucleoside-binding site

1 reference

12 December 2020

Selective isotopic enrichment of synthetic RNA: application to the HIV-1 TAR element

1 reference

12 December 2020

Complementary segmental labeling of large RNAs: economic preparation and simplified NMR spectra for measurement of more RDCs

1 reference

12 December 2020

15N-15N J-coupling across Hg(II): direct observation of Hg(II)-mediated T-T base pairs in a DNA duplex

1 reference

12 December 2020

Minimal catalytic domain of a group I self-splicing intron RNA

1 reference

12 December 2020

Studies of physicochemical properties of N-H...N hydrogen bonds in DNA, using selective 15N-labeling and direct 15N 1D NMR

1 reference

12 December 2020

H...N hydrogen bond lengths in double stranded DNA from internucleotide dipolar couplings

1 reference

12 December 2020

The minimal tRNA: unique structure of Ascaris suum mitochondrial tRNA(Ser)(UCU) having a short T arm and lacking the entire D arm

1 reference

12 December 2020

Differential binding of Mg2+, Zn2+, and Cd2+ at two sites in a hammerhead ribozyme motif, determined by 15N NMR

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKR951

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22080547%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22080547%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

PubMed publication ID

22080547

1 reference