(Q28315032)

2

0 references

S. Sun

3

0 references

J. A. Piccirilli

4

0 references

D. Herschlag

Proceedings of the National Academy of Sciences of the United States of America

5

0 references

language of work or name

English

0 references

publication date

26 October 1999

0 references

published in

1 reference

Metal ion catalysis in the Tetrahymena ribozyme reaction

volume

96

0 references

issue

22

0 references

page(s)

12299-12304

0 references

cites work

1 reference

https://api.crossref.org/works/10.1073/PNAS.96.22.12299

Catalytic metal ion binding in enolase: the crystal structure of an enolase-Mn2+-phosphonoacetohydroxamate complex at 2.4-A resolution

21 April 2017

1 reference

https://api.crossref.org/works/10.1073/PNAS.96.22.12299

X-ray structure and catalytic mechanism of lobster enolase

21 April 2017

1 reference

https://api.crossref.org/works/10.1073/PNAS.96.22.12299

Mg2+ binding to the active site of EcoRV endonuclease: a crystallographic study of complexes with substrate and product DNA at 2 A resolution

21 April 2017

1 reference

https://api.crossref.org/works/10.1073/PNAS.96.22.12299

Metal ion-mediated substrate-assisted catalysis in type II restriction endonucleases

21 April 2017

1 reference

https://api.crossref.org/works/10.1073/PNAS.96.22.12299

Structural studies of metal binding by inositol monophosphatase: evidence for two-metal ion catalysis

21 April 2017

1 reference

https://api.crossref.org/works/10.1073/PNAS.96.22.12299

Crystallographic studies of the catalytic mechanism of the neutral form of fructose-1,6-bisphosphatase

21 April 2017

1 reference

https://api.crossref.org/works/10.1073/PNAS.96.22.12299

A general two-metal-ion mechanism for catalytic RNA

21 April 2017

1 reference

https://api.crossref.org/works/10.1073/PNAS.96.22.12299

Effects of substrate structure on the kinetics of circle opening reactions of the self-splicing intervening sequence from Tetrahymena thermophila: evidence for substrate and Mg2+ binding interactions

21 April 2017

1 reference

https://api.crossref.org/works/10.1073/PNAS.96.22.12299

A mechanism for all polymerases

21 April 2017

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.96.22.12299

Binuclear Metallohydrolases

21 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22911

Protonated 2'-aminoguanosine as a probe of the electrostatic environment of the active site of the Tetrahymena group I ribozyme

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22911

Probing the role of metal ions in RNA catalysis: kinetic and thermodynamic characterization of a metal ion interaction with the 2'-moiety of the guanosine nucleophile in the Tetrahymena group I ribozyme

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22911

A re-investigation of the thio effect at the hammerhead cleavage site

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22911

A minor groove RNA triple helix within the catalytic core of a group I intron

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22911

A two-metal ion mechanism operates in the hammerhead ribozyme-mediated cleavage of an RNA substrate

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22911

A second catalytic metal ion in group I ribozyme

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22911

Evidence for a hydroxide ion bridging two magnesium ions at the active site of the hammerhead ribozyme

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22911

Effects of divalent metal ions on individual steps of the Tetrahymena ribozyme reaction

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22911

Quantitating tertiary binding energies of 2' OH groups on the P1 duplex of the Tetrahymena ribozyme: intrinsic binding energy in an RNA enzyme

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22911

Metal ion interaction with cosubstrate in self-splicing of group I introns

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22911

Metal-binding sites in the major groove of a large ribozyme domain

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22911

The catalytic domain of avian sarcoma virus integrase: conformation of the active-site residues in the presence of divalent cations

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22911

Ribonuclease P (RNase P) RNA is converted to a Cd(2+)-ribozyme by a single Rp-phosphorothioate modification in the precursor tRNA at the RNase P cleavage site

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22911

Isolation of a local tertiary folding transition in the context of a globally folded RNA.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22911

Strategies for RNA folding

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22911

The environment of two metal ions surrounding the splice site of a group I intron

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22911

Role of metal ions in ribozymes.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22911

Exocyclic amine of the conserved G.U pair at the cleavage site of the Tetrahymena ribozyme contributes to 5'-splice site selection and transition state stabilization

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22911

How many catalytic RNAs? Ions and the Cheshire cat conjecture.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22911

Chelation of serine 39 to Mg2+ latches a gate at the active site of enolase: structure of the bis(Mg2+) complex of yeast enolase and the intermediate analog phosphonoacetohydroxamate at 2.1-A resolution

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22911

Dissection of the role of the conserved G.U pair in group I RNA self-splicing

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22911

Minor groove recognition of the conserved G.U pair at the Tetrahymena ribozyme reaction site

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22911

Higher order folding and domain analysis of the ribozyme from Bacillus subtilis ribonuclease P.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22911

Use of binding energy by an RNA enzyme for catalysis by positioning and substrate destabilization

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22911

A positive entropy change for guanosine binding and for the chemical step in the Tetrahymena ribozyme reaction

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22911

The importance of being ribose at the cleavage site in the Tetrahymena ribozyme reaction

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22911

Contributions of 2'-hydroxyl groups of the RNA substrate to binding and catalysis by the Tetrahymena ribozyme. An energetic picture of an active site composed of RNA.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22911

Tertiary interactions with the internal guide sequence mediate docking of the P1 helix into the catalytic core of the Tetrahymena ribozyme

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22911

Ribozyme inhibitors: deoxyguanosine and dideoxyguanosine are competitive inhibitors of self-splicing of the Tetrahymena ribosomal ribonucleic acid precursor

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22911

Sequence-specific endoribonuclease activity of the Tetrahymena ribozyme: enhanced cleavage of certain oligonucleotide substrates that form mismatched ribozyme-substrate complexes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22911

Guanosine binding required for cyclization of the self-splicing intervening sequence ribonucleic acid from Tetrahymena thermophila

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22911

Catalysis of RNA cleavage by the Tetrahymena thermophila ribozyme. 2. Kinetic description of the reaction of an RNA substrate that forms a mismatch at the active site

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22911

Catalysis of RNA cleavage by the Tetrahymena thermophila ribozyme. 1. Kinetic description of the reaction of an RNA substrate complementary to the active site

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22911

Visualizing the higher order folding of a catalytic RNA molecule

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22911

Comparison of binding of mixed ribose-deoxyribose analogues of CUCU to a ribozyme and to GGAGAA by equilibrium dialysis: evidence for ribozyme specific interactions with 2' OH groups

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22911

Evidence for processivity and two-step binding of the RNA substrate from studies of J1/2 mutants of the Tetrahymena ribozyme

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22911

Ribozyme recognition of RNA by tertiary interactions with specific ribose 2′-OH groups

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22911

Structural analysis of spermine and magnesium ion binding to yeast phenylalanine transfer RNA

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22911

Ribonuclease P catalysis requires Mg2+ coordinated to the pro-RP oxygen of the scissile bond.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22911

Activation/attenuation model for RNase H. A one-metal mechanism with second-metal inhibition.

2 June 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.96.22.12299

Does the Restriction EndonucleaseEcoRV Employ a Two-Metal-Ion Mechanism for DNA Cleavage?†

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.96.22.12299

Metal ion catalysis during splicing of premessenger RNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.96.22.12299

Synthesis of 3'-thioribonucleosides and their incorporation into oligoribonucleotides via phosphoramidite chemistry.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22911

Manganese Enzymes with Binuclear Active Sites

27 November 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.96.22.12299

Multiple magnesium ions in the ribonuclease P reaction mechanism

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.96.22.12299

Ribozyme-mediated cleavage of a substrate analogue containing an internucleotide-bridging 5'-phosphorothioate: evidence for the single-metal model

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.96.22.12299

Magnesium ions are required by Bacillus subtilis ribonuclease P RNA for both binding and cleaving precursor tRNAAsp

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.96.22.12299

Dynamics of ribozyme binding of substrate revealed by fluorescence-detected stopped-flow methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.96.22.12299

A hydrogen-bonding triad stabilizes the chemical transition state of a group I ribozyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.96.22.12299

Anticodon loop of tRNAPhe: structure, dynamics, and Mg2+ binding

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.96.22.12299

A magnesium ion core at the heart of a ribozyme domain

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/10535916

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Determination of the Rate of Hexokinase-Glucose Dissociation by the Isotope-trapping Method

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/10535916

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.96.22.12299

1 reference

release_cyesestwrzamhiqazw5f3gmpt4

0 references

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/cyesestwrzamhiqazw5f3gmpt4

mapped directly with Wikidata item

24 November 2022

based on heuristic

4299156

1 reference

1 reference

1 reference