(Q40028342)

16 September 2017

title

Superfolder GFP reporters validate diverse new mRNA targets of the classic porin regulator, MicF RNA. (English)

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16 September 2017

6

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16 September 2017

Kai Papenfort

3

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author name string

Colin P Corcoran

1

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16 September 2017

Dimitri Podkaminski

2

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16 September 2017

Johannes H Urban

4

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16 September 2017

Jay C D Hinton

5

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16 September 2017

language of work or name

English

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publication date

28 March 2012

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16 September 2017

published in

Molecular Microbiology

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16 September 2017

volume

84

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16 September 2017

issue

3

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16 September 2017

page(s)

428-445

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Both RNase E and RNase III control the stability of sodB mRNA upon translational inhibition by the small regulatory RNA RyhB.

16 September 2017

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Multiple factors dictate target selection by Hfq-binding small RNAs

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All things must pass: contrasts and commonalities in eukaryotic and bacterial mRNA decay

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Translation rates of individual codons are not correlated with tRNA abundances or with frequencies of utilization in Escherichia coli

21 January 2018

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Small RNA binding to 5' mRNA coding region inhibits translational initiation

21 January 2018

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Small RNA-mediated regulation at the level of transcript stability

21 January 2018

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Endonucleolytic initiation of mRNA decay in Escherichia coli

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21 January 2018

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micF RNA in ompB mutants of Escherichia coli: different pathways regulate micF RNA levels in response to osmolarity and temperature change

21 January 2018

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One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products

21 January 2018

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A role for the Escherichia coli H-NS-like protein StpA in OmpF porin expression through modulation of micF RNA stability

21 January 2018

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MicF: an antisense RNA gene involved in response of Escherichia coli to global stress factors

21 January 2018

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YliH (BssR) and YceP (BssS) regulate Escherichia coli K-12 biofilm formation by influencing cell signaling

21 January 2018

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The regulatory RNA gene micF is present in several species of Gram‐negative bacteria and is phylogenetically conserved

21 January 2018

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Caught at its own game: regulatory small RNA inactivated by an inducible transcript mimicking its target

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Activation of gene expression by small RNA.

21 January 2018

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A conserved RpoS-dependent small RNA controls the synthesis of major porin OmpD

21 January 2018

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Small RNAs endow a transcriptional activator with essential repressor functions for single-tier control of a global stress regulon

21 January 2018

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Bacterial small RNA regulators: versatile roles and rapidly evolving variations

21 January 2018

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The 5' end of two redundant sRNAs is involved in the regulation of multiple targets, including their own regulator

21 January 2018

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https://api.crossref.org/works/10.1111%2FJ.1365-2958.2012.08031.X

A mixed double negative feedback loop between the sRNA MicF and the global regulator Lrp.

21 January 2018

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Conserved small non-coding RNAs that belong to the sigmaE regulon: role in down-regulation of outer membrane proteins

21 January 2018

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https://api.crossref.org/works/10.1111%2FJ.1365-2958.2012.08031.X

Feedback control of glucosamine-6-phosphate synthase GlmS expression depends on the small RNA GlmZ and involves the novel protein YhbJ in Escherichia coli

21 January 2018

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Independent and tight regulation of transcriptional units in Escherichia coli via the LacR/O, the TetR/O and AraC/I1-I2 regulatory elements

21 January 2018

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Ribonuclease E is a 5'-end-dependent endonuclease

21 January 2018

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https://api.crossref.org/works/10.1111%2FJ.1365-2958.2012.08031.X

RNA, but not protein partners, is directly responsible for translational silencing by a bacterial Hfq-binding small RNA.

21 January 2018

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A small RNA regulates the expression of genes involved in iron metabolism in Escherichia coli

21 January 2018

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Effect of RyhB small RNA on global iron use in Escherichia coli

21 January 2018

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https://api.crossref.org/works/10.1111%2FJ.1365-2958.2012.08031.X

A unique mechanism regulating gene expression: translational inhibition by a complementary RNA transcript (micRNA)

21 January 2018

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https://api.crossref.org/works/10.1111%2FJ.1365-2958.2012.08031.X

Spot 42 RNA mediates discoordinate expression of the E. coli galactose operon

21 January 2018

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RNase E action at a distance: degradation of target mRNAs mediated by an Hfq-binding small RNA in bacteria

21 January 2018

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https://api.crossref.org/works/10.1111%2FJ.1365-2958.2012.08031.X

RNase E-based ribonucleoprotein complexes: mechanical basis of mRNA destabilization mediated by bacterial noncoding RNAs

21 January 2018

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https://api.crossref.org/works/10.1111%2FJ.1365-2958.2012.08031.X

The role of codon selection in regulation of translation efficiency deduced from synthetic libraries

21 January 2018

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https://api.crossref.org/works/10.1111%2FJ.1365-2958.2012.08031.X

Alterations of the outer membrane composition in Escherichia coli lacking the histone-like protein HU.

21 January 2018

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SigmaE-dependent small RNAs of Salmonella respond to membrane stress by accelerating global omp mRNA decay

21 January 2018

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Systematic deletion of Salmonella small RNA genes identifies CyaR, a conserved CRP-dependent riboregulator of OmpX synthesis

21 January 2018

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Specific and pleiotropic patterns of mRNA regulation by ArcZ, a conserved, Hfq-dependent small RNA

21 January 2018

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Evidence for an autonomous 5' target recognition domain in an Hfq-associated small RNA

21 January 2018

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The ancestral SgrS RNA discriminates horizontally acquired Salmonella mRNAs through a single G-U wobble pair

21 January 2018

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Engineering and characterization of a superfolder green fluorescent protein

21 January 2018

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https://api.crossref.org/works/10.1111%2FJ.1365-2958.2012.08031.X

A small non-coding RNA of the invasion gene island (SPI-1) represses outer membrane protein synthesis from the Salmonella core genome

21 January 2018

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https://api.crossref.org/works/10.1111%2FJ.1365-2958.2012.08031.X

Coding sequence targeting by MicC RNA reveals bacterial mRNA silencing downstream of translational initiation

21 January 2018

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https://api.crossref.org/works/10.1111%2FJ.1365-2958.2012.08031.X

From acids to osmZ: multiple factors influence synthesis of the OmpF and OmpC porins in Escherichia coli.

21 January 2018

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https://api.crossref.org/works/10.1111%2FJ.1365-2958.2012.08031.X

Small RNA-induced mRNA degradation achieved through both translation block and activated cleavage

21 January 2018

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https://api.crossref.org/works/10.1111%2FJ.1365-2958.2012.08031.X

Role of the Escherichia coli Hfq protein in GcvB regulation of oppA and dppA mRNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2012.08031.X

Fast and effective prediction of microRNA/target duplexes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2012.08031.X

The small RNA GlmY acts upstream of the sRNA GlmZ in the activation of glmS expression and is subject to regulation by polyadenylation in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2012.08031.X

The small RNA SgrS controls sugar-phosphate accumulation by regulating multiple PTS genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2012.08031.X

Active-site architecture and catalytic mechanism of the lipid A deacylase LpxR of Salmonella typhimurium

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2012.08031.X

A functional update of the Escherichia coli K-12 genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2012.08031.X

A small RNA regulates multiple ABC transporter mRNAs by targeting C/A-rich elements inside and upstream of ribosome-binding sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2012.08031.X

Pervasive post-transcriptional control of genes involved in amino acid metabolism by the Hfq-dependent GcvB small RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2012.08031.X

A structural view of translation initiation in bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2012.08031.X

The RNA chaperone Hfq is essential for the virulence of Salmonella typhimurium

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2012.08031.X

Deep sequencing analysis of small noncoding RNA and mRNA targets of the global post-transcriptional regulator, Hfq

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2012.08031.X

Deep sequencing of Salmonella RNA associated with heterologous Hfq proteins in vivo reveals small RNAs as a major target class and identifies RNA processing phenotypes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2012.08031.X

A small RNA acts as an antisilencer of the H-NS-silenced rcsA gene of Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2012.08031.X

Antisense RNA protects mRNA from RNase E degradation by RNA-RNA duplex formation during phage infection

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2012.08031.X

Bacteriophage-mediated generalized transduction in Escherichia coli and Salmonella typhimurium

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2012.08031.X

Regulation by small RNAs in bacteria: expanding frontiers

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2012.08031.X

Regulation of the expression of the cell-cycle gene ftsZ by DicF antisense RNA. Division does not require a fixed number of FtsZ molecules

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2012.08031.X

Translational control and target recognition by Escherichia coli small RNAs in vivo

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2012.08031.X

Two seemingly homologous noncoding RNAs act hierarchically to activate glmS mRNA translation

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2012.08031.X

A green fluorescent protein (GFP)-based plasmid system to study post-transcriptional control of gene expression in vivo

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2012.08031.X

A conserved small RNA promotes discoordinate expression of the glmUS operon mRNA to activate GlmS synthesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2012.08031.X

Hfq and its constellation of RNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2012.08031.X

Kill the messenger: bacterial antisense RNA promotes mRNA decay.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2012.08031.X

Global analysis of small RNA and mRNA targets of Hfq

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2012.08031.X

10.1111/J.1365-2958.2012.08031.X

21 January 2018

Identifiers

DOI

1 reference

16 September 2017

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