(Q40140422)

17 September 2017

Defining the transmembrane helix of M2 protein from influenza A by molecular dynamics simulations in a lipid bilayer (English)

1 reference

17 September 2017

transmembrane protein

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author name string

L R Forrest

series ordinal

1

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17 September 2017

D P Tieleman

series ordinal

2

1 reference

17 September 2017

M S Sansom

series ordinal

3

1 reference

17 September 2017

language of work or name

English

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publication date

1 April 1999

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17 September 2017

11

1 reference

based on heuristic

inferred from page(s)

published in

Biophysical Journal

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17 September 2017

76

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17 September 2017

4

1 reference

17 September 2017

1886-1896

1 reference

describes a project that uses

17 September 2017

molecular dynamics simulation

1 reference

based on heuristic

inferred from title

cites work

An alamethicin channel in a lipid bilayer: molecular dynamics simulations

1 reference

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The M2 channel of influenza A virus: a molecular dynamics study

22 September 2017

1 reference

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A molecular dynamics study of the pores formed by Escherichia coli OmpF porin in a fully hydrated palmitoyloleoylphosphatidylcholine bilayer

22 September 2017

1 reference

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Genome-wide analysis of integral membrane proteins from eubacterial, archaean, and eukaryotic organisms

22 September 2017

1 reference

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Adhesion forces of lipids in a phospholipid membrane studied by molecular dynamics simulations

22 September 2017

1 reference

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The Structure of the Potassium Channel: Molecular Basis of K+ Conduction and Selectivity

22 September 2017

1 reference

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How many membrane proteins are there?

22 September 2017

1 reference

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Hydrogen bonding in helical polypeptides from molecular dynamics simulations and amide hydrogen exchange analysis: alamethicin and melittin in methanol

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300164

Transmembrane four-helix bundle of influenza A M2 protein channel: structural implications from helix tilt and orientation

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300164

Molecular dynamics of individual alpha-helices of bacteriorhodopsin in dimyristol phosphatidylocholine. I. Structure and dynamics

22 September 2017

1 reference

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A functionally defined model for the M2 proton channel of influenza A virus suggests a mechanism for its ion selectivity

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300164

The active oligomeric state of the minimalistic influenza virus M2 ion channel is a tetramer.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300164

Mechanism of alamethicin insertion into lipid bilayers

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300164

Topology prediction for helical transmembrane proteins at 86% accuracy

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300164

The limits of protein secondary structure prediction accuracy from multiple sequence alignment.

22 September 2017

1 reference

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A model recognition approach to the prediction of all-helical membrane protein structure and topology

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300164

Prediction of transmembrane segments in proteins utilising multiple sequence alignments

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300164

Ion channel activity of influenza A virus M2 protein: characterization of the amantadine block

22 September 2017

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300164

22 September 2017

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977347-9

Parallel helix bundles and ion channels: molecular modeling via simulated annealing and restrained molecular dynamics

7 January 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300164

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300164

Hypothesis about the function of membrane-buried proline residues in transport proteins

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300164

Helix geometry in proteins

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300164

Molecular Architecture and Electrostatic Properties of a Bacterial Porin

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300164

Membrane protein structure prediction. Hydrophobicity analysis and the positive-inside rule

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300164

The functions of tryptophan residues in membrane proteins

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300164

The permeation pathway of neurotransmitter-gated ion channels

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300164

The transmembrane domain of influenza A M2 protein forms amantadine-sensitive proton channels in planar lipid bilayers

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300164

Conserved positioning of proline residues in membrane-spanning helices of ion-channel proteins

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300164

Lipid-alamethicin interactions influence alamethicin orientation

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300164

Molecular dynamics simulations of membranes with embedded proteins and peptides: porin, alamethicin and influenza virus M2.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300164

A computer perspective of membranes: molecular dynamics studies of lipid bilayer systems

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300164

The influenza A virus M2 channel: a molecular modeling and simulation study.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300164

Molecular dynamics simulations of a fluid bilayer of dipalmitoylphosphatidylcholine at full hydration, constant pressure, and constant temperature

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300164

Competing interactions contributing to alpha-helical stability in aqueous solution

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300164

Proline kinks in transmembrane alpha-helices

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300164

The secondary structure of influenza A M2 transmembrane domain. A circular dichroism study

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300164

Lipid properties and the orientation of aromatic residues in OmpF, influenza M2, and alamethicin systems: molecular dynamics simulations

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300164

Simulations of the M2 channel for influenza A virus.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300164

A novel, non-statistical method for predicting breaks in transmembrane helices

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300164

Reversible peptide folding in solution by molecular dynamics simulation

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300164

Structure and dynamics of an amphiphilic peptide in a lipid bilayer: a molecular dynamics study

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300164

Transmembrane helix structure, dynamics, and interactions: multi-nanosecond molecular dynamics simulations

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300164

Selective proton permeability and pH regulation of the influenza virus M2 channel expressed in mouse erythroleukaemia cells.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300164

New alignment strategy for transmembrane proteins.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300164

A simple protocol for identification of helical and mobile residues in membrane proteins

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300164

Are there dominant membrane protein families with a given number of helices?

4 November 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977347-9

Molecular dynamics with coupling to an external bath

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977347-9

GROMACS: A message-passing parallel molecular dynamics implementation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977347-9

Folding proteins into membranes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977347-9

Two models of the influenza A M2 channel domain: verification by comparison

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977347-9

Intrahelical hydrogen bonding of serine, threonine and cysteine residues within alpha-helices and its relevance to membrane-bound proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977347-9

The effect of environment on the stability of an integral membrane helix: Molecular dynamics simulations of surfactant protein C in chloroform, methanol and water

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977347-9

MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977347-9

Experimentally based orientational refinement of membrane protein models: A structure for the Influenza A M2 H+ channel

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977347-9

Synthetic amphiphilic peptide models for protein ion channels

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977347-9

Membrane protein folding and oligomerization: the two-stage model

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977347-9

Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977347-9

Proline residues in transmembrane helices of channel and transport proteins: a molecular modelling study

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977347-9

Viral ion channels: molecular modeling and simulation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977347-9

Alamethicin channels in a membrane: molecular dynamics simulations

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977347-9

Alamethicin helices in a bilayer and in solution: molecular dynamics simulations

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977347-9

Acetylcholine receptor channel imaged in the open state

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977347-9

Molecular dynamics simulation of a synthetic ion channel

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977347-9

10.1016/S0006-3495(99)77347-9

7 January 2021

Identifiers

DOI

1 reference

17 September 2017

1 reference

17 September 2017

PubMed publication ID

10096886

1 reference