(Q40156069)

18 September 2017

Nonlinear methods in the analysis of protein sequences: a case study in rubredoxins (English)

1 reference

18 September 2017

Giuliani A

1

1 reference

18 September 2017

Benigni R

2

1 reference

18 September 2017

Sirabella P

3

1 reference

18 September 2017

Zbilut JP

4

1 reference

18 September 2017

Colosimo A

5

1 reference

18 September 2017

language of work or name

English

0 references

publication date

1 January 2000

1 reference

18 September 2017

14

1 reference

based on heuristic

inferred from page(s)

published in

Biophysical Journal

1 reference

18 September 2017

78

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18 September 2017

1

1 reference

18 September 2017

136-149

1 reference

Hydrophobic free energy eigenfunctions of pore, channel, and transporter proteins contain beta-burst patterns

18 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300625

Recurrence quantification analysis in structure-function relationships of proteins: an overview of a general methodology applied to the case of TEM-1 beta-lactamase

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300625

The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300625

Mode matches and their locations in the hydrophobic free energy sequences of peptide ligands and their receptor eigenfunctions

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300625

A nonrandom dynamic component in the synaptic noise of a central neuron

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300625

TreeView: an application to display phylogenetic trees on personal computers

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300625

The Shannon information entropy of protein sequences

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300625

Dynamical assessment of physiological systems and states using recurrence plot strategies

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300625

Correlation of sequence hydrophobicities measures similarity in three-dimensional protein structure

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300625

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300625

Principles that govern the folding of protein chains

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300625

The neighbor-joining method: a new method for reconstructing phylogenetic trees

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300625

Improved tools for biological sequence comparison

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300625

Fast and sensitive multiple sequence alignments on a microcomputer

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300625

Comparative QSAR: Toward a Deeper Understanding of Chemicobiological Interactions

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300625

Mode matches in hydrophobic free energy eigenfunctions predict peptide-protein interactions

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300625

Correlations in protein sequences and property codes.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300625

A practitioner's perspective of the role of quantitative structure-activity analysis in medicinal chemistry

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300625

Recurrence Plots of Dynamical Systems

17 June 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2800%2976580-5

Dissecting contributions to the thermostability of Pyrococcus furiosus rubredoxin: beta-sheet chimeras

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2800%2976580-5

Hidden peculiarities in the potential energy time series of a tripeptide highlighted by a recurrence plot analysis: A molecular dynamics simulation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2800%2976580-5

Correlation of Biological Activity of Phenoxyacetic Acids with Hammett Substituent Constants and Partition Coefficients

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2800%2976580-5

Easily calculable measure for the complexity of spatiotemporal patterns

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2800%2976580-5

Rubredoxin in crystalline state

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2800%2976580-5

Signal sequences are not uniformly hydrophobic

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2800%2976580-5

A nonlinear explanation of aging-induced changes in heartbeat dynamics

7 January 2021

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/10620281

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/S0006-3495(00)76580-5

1 reference

18 September 2017

1 reference

18 September 2017

PubMed publication ID

10620281

1 reference