(Q40163819)

http://europepmc.org/abstract/PMC/5616171

10 January 2018

title

Quantifiable predictive features define epitope-specific T cell receptor repertoires (English)

1 reference

http://europepmc.org/abstract/PMC/5616171

10 January 2018

author

Tomer Hertz

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28636592%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

Aisha Souquette

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28636592%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

Jeremy Chase Crawford

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28636592%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

Katherine Kedzierska

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28636592%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

Nicole L La Gruta

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28636592%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

Paul G. Thomas

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28636592%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

author name string

Pradyot Dash

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28636592%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

Andrew J Fiore-Gartland

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28636592%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

George C Wang

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28636592%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

Shalini Sharma

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28636592%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

E Bridie Clemens

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28636592%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

Thi H O Nguyen

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28636592%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

Philip Bradley

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28636592%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

language of work or name

English

0 references

publication date

21 June 2017

1 reference

http://europepmc.org/abstract/PMC/5616171

10 January 2018

published in

Nature

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28636592%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

volume

547

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28636592%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

issue

7661

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28636592%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

page(s)

89-93

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28636592%20AND%20SRC:MED&resulttype=core&format=json

Feature selection using a one dimensional naïve Bayes' classifier increases the accuracy of support vector machine classification of CDR3 repertoires

1 June 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5616171

Isolation of T-Cell Receptors Specifically Reactive with Mutated Tumor-Associated Antigens from Tumor-Infiltrating Lymphocytes Based on CD137 Expression.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5616171

Tumor- and Neoantigen-Reactive T-cell Receptors Can Be Identified Based on Their Frequency in Fresh Tumor

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5616171

RTCR: a pipeline for complete and accurate recovery of T cell repertoires from high throughput sequencing data

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5616171

Landscape of tumor-infiltrating T cell repertoire of human cancers

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5616171

Rapid cloning, expression, and functional characterization of paired αβ and γδ T-cell receptor chains from single-cell analysis.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5616171

High-resolution analysis of the human T-cell receptor repertoire

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5616171

Tracking global changes induced in the CD4 T-cell receptor repertoire by immunization with a complex antigen using short stretches of CDR3 protein sequence

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5616171

Fast multiclonal clusterization of V(D)J recombinations from high-throughput sequencing

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5616171

Mother and child T cell receptor repertoires: deep profiling study.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5616171

Chromatin conformation governs T-cell receptor Jβ gene segment usage

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5616171

T cell receptor αβ diversity inversely correlates with pathogen-specific antibody levels in human cytomegalovirus infection

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5616171

Highly diverse TCRα chain repertoire of pre-immune CD8⁺ T cells reveals new insights in gene recombination

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5616171

Structural basis for enabling T-cell receptor diversity within biased virus-specific CD8+ T-cell responses

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5616171

Evolution of the antigen-specific CD8+ TCR repertoire across the life span: evidence for clonal homogenization of the old TCR repertoire

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5616171

Paired analysis of TCRα and TCRβ chains at the single-cell level in mice

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5616171

Genetic and Structural Basis for Selection of a Ubiquitous T Cell Receptor Deployed in Epstein-Barr Virus Infection

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5616171

IMGT, the international ImMunoGeneTics information system.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5616171

The structural dynamics and energetics of an immunodominant T cell receptor are programmed by its Vbeta domain

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5616171

Epitope-specific TCR repertoire diversity imparts no functional advantage on the CD8+ T cell response to cognate viral peptides

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5616171

Sharing of T cell receptors in antigen-specific responses is driven by convergent recombination

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5616171

Structural determinants of T-cell receptor bias in immunity

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5616171

A structural basis for immunodominant human T cell receptor recognition

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5616171

T-cell antigen receptor genes and T-cell recognition

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5616171

Basic local alignment search tool

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5616171

Amino acid substitution matrices from protein blocks

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5616171

Single-Cell Analysis of T-Cell Receptor αβ Repertoire.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5616171

MiTCR: software for T-cell receptor sequencing data analysis.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5616171

Recombinatorial biases and convergent recombination determine interindividual TCRβ sharing in murine thymocytes.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5616171

Methods for comparing the diversity of samples of the T cell receptor repertoire

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5616171

On Information and Sufficiency

20 August 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE22383

Divergence measures based on the Shannon entropy

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE22383

Paired TCRαβ analysis of virus-specific CD8(+) T cells exposes diversity in a previously defined 'narrow' repertoire

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE22383

Cancer immunotherapy based on mutation-specific CD4+ T cells in a patient with epithelial cancer

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5616171

High-throughput pairing of T cell receptor α and β sequences

4 November 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE22383

inferred from DOI database lookup

7 January 2021

based on heuristic

Information theoretic measures for clusterings comparison

1 reference

https://api.crossref.org/works/10.1038%2FNATURE22383

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1038/NATURE22383

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28636592%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

1 June 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28636592%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

PubMed publication ID

28636592

1 reference