(Q40200829)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17591448%20AND%20SRC:MED&resulttype=core&format=json

1 January 2020

title

Assessing the monophyly of chlorophyll-c containing plastids by multi-gene phylogenies under the unlinked model conditions (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17591448%20AND%20SRC:MED&resulttype=core&format=json

1 January 2020

1 reference

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17591448%20AND%20SRC:MED&resulttype=core&format=json

1 January 2020

Kazuhiko Ohshima

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17591448%20AND%20SRC:MED&resulttype=core&format=json

1 January 2020

Yuji Inagaki

series ordinal

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17591448%20AND%20SRC:MED&resulttype=core&format=json

1 January 2020

author name string

Kiyotaka Takishita

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17591448%20AND%20SRC:MED&resulttype=core&format=json

1 January 2020

language of work or name

1 reference

25 May 2007

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17591448%20AND%20SRC:MED&resulttype=core&format=json

Molecular Phylogenetics and Evolution

1 January 2020

number of pages

12

1 reference

based on heuristic

inferred from page(s)

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17591448%20AND%20SRC:MED&resulttype=core&format=json

1 January 2020

volume

45

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17591448%20AND%20SRC:MED&resulttype=core&format=json

1 January 2020

issue

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17591448%20AND%20SRC:MED&resulttype=core&format=json

1 January 2020

page(s)

227-238

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17591448%20AND%20SRC:MED&resulttype=core&format=json

A new look at the statistical model identification

1 January 2020

cites work

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.05.003

Recycled plastids: a 'green movement' in eukaryotic evolution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.05.003

Lateral gene transfer and the evolution of plastid-targeted proteins in the secondary plastid-containing alga Bigelowiella natans

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.05.003

Dinoflagellate expressed sequence tag data indicate massive transfer of chloroplast genes to the nuclear genome

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.05.003

Chlorophyll c-containing plastid relationships based on analyses of a multigene data set with all four chromalveolate lineages

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.05.003

Photosynthetic eukaryotes unite: endosymbiosis connects the dots

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.05.003

The non-photosynthetic plastid in malarial parasites and other apicomplexans is derived from outside the green plastid lineage

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.05.003

Apicoplast genome of the coccidian Eimeria tenella

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.05.003

Principles of protein and lipid targeting in secondary symbiogenesis: euglenoid, dinoflagellate, and sporozoan plastid origins and the eukaryote family tree

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.05.003

Chloroplast evolution: secondary symbiogenesis and multiple losses

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.05.003

Tracing the Thread of Plastid Diversity through the Tapestry of Life.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.05.003

Rampant horizontal transfer and duplication of rubisco genes in eubacteria and plastids.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.05.003

Use of a deviant mitochondrial genetic code in yellow-green algae as a landmark for segregating members within the phylum

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.05.003

Phylogenetic analysis of diatom coxI genes and implications of a fluctuating GC content on mitochondrial genetic code evolution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.05.003

Macronuclear genome sequence of the ciliate Tetrahymena thermophila, a model eukaryote

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.05.003

Nuclear-encoded, plastid-targeted genes suggest a single common origin for apicomplexan and dinoflagellate plastids.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.05.003

A green algal apicoplast ancestor.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.05.003

Genome sequence of the human malaria parasite Plasmodium falciparum

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.05.003

7 January 2021

Mitochondrial evolution

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.05.003

A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.05.003

Migration of the plastid genome to the nucleus in a peridinin dinoflagellate.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.05.003

Nucleus-encoded, plastid-targeted glyceraldehyde-3-phosphate dehydrogenase (GAPDH) indicates a single origin for chromalveolate plastids

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.05.003

On the monophyly of chromalveolates using a six-protein phylogeny of eukaryotes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.05.003

A deviant mitochondrial genetic code in prymnesiophytes (yellow-algae): UGA codon for tryptophan.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.05.003

Directionally evolving genetic code: the UGA codon from stop to tryptophan in mitochondria.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.05.003

Algae or protozoa: phylogenetic position of euglenophytes and dinoflagellates as inferred from mitochondrial sequences.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.05.003

Phylogenetic estimation under codon models can be biased by codon usage heterogeneity

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.05.003

Phylogenetic artifacts can be caused by leucine, serine, and arginine codon usage heterogeneity: dinoflagellate plastid origins as a case study

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.05.003

The origin of chlorarachniophyte plastids, as inferred from phylogenetic comparisons of amino acid sequences of EF-Tu

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.05.003

A plastid of probable green algal origin in Apicomplexan parasites.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.05.003

Performance of maximum parsimony and likelihood phylogenetics when evolution is heterogeneous

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.05.003

Plastids in parasites of humans

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.05.003

A nuclear-encoded form II RuBisCO in dinoflagellates

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.05.003

THE SYMBIOTIC BIRTH AND SPREAD OF PLASTIDS: HOW MANY TIMES AND WHODUNIT?

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.05.003

Multiple gene phylogenies support the monophyly of cryptomonad and haptophyte host lineages

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.05.003

Gene replacement of fructose-1,6-bisphosphate aldolase supports the hypothesis of a single photosynthetic ancestor of chromalveolates

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.05.003

A "green" phosphoribulokinase in complex algae with red plastids: evidence for a single secondary endosymbiosis leading to haptophytes, cryptophytes, heterokonts, and dinoflagellates

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.05.003

MODELTEST: testing the model of DNA substitution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.05.003

Combining multiple data sets in a likelihood analysis: which models are the best?

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.05.003

An exceptional horizontal gene transfer in plastids: gene replacement by a distant bacterial paralog and evidence that haptophyte and cryptophyte plastids are sisters

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.05.003

Monophyly of primary photosynthetic eukaryotes: green plants, red algae, and glaucophytes.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.05.003

The Complete Chloroplast Genome of the Chlorarachniophyte Bigelowiella natans: Evidence for Independent Origins of Chlorarachniophyte and Euglenid Secondary Endosymbionts

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.05.003

Capsaspora owczarzaki is an independent opisthokont lineage.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.05.003

Sorting wheat from chaff in multi-gene analyses of chlorophyll c-containing plastids.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.05.003

TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.05.003

Heterotachy processes in rhodophyte-derived secondhand plastid genes: Implications for addressing the origin and evolution of dinoflagellate plastids.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.05.003

An approximately unbiased test of phylogenetic tree selection

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.05.003

CONSEL: for assessing the confidence of phylogenetic tree selection

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.05.003

Likelihood, parsimony, and heterogeneous evolution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.05.003

A close relationship between Cercozoa and Foraminifera supported by phylogenetic analyses based on combined amino acid sequences of three cytoskeletal proteins (actin, alpha-tubulin, and beta-tubulin)

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.05.003

Phytophthora Genome Sequences Uncover Evolutionary Origins and Mechanisms of Pathogenesis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.05.003

Evidence that some dinoflagellates contain a ribulose-1,5-bisphosphate carboxylase/oxygenase related to that of the alpha-proteobacteria

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.05.003

The evolutionary origin of the 35 kb circular DNA of Plasmodium falciparum: new evidence supports a possible rhodophyte ancestry.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.05.003

A molecular timeline for the origin of photosynthetic eukaryotes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.05.003

The single, ancient origin of chromist plastids

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.05.003

Tertiary endosymbiosis driven genome evolution in dinoflagellate algae

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.05.003

Defining the major lineages of red algae (Rhodophyta)

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.05.003

Phylogeny of ultra-rapidly evolving dinoflagellate chloroplast genes: a possible common origin for sporozoan and dinoflagellate plastids

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.05.003