(Q40272621)

19 September 2017

Dynamics of water molecules in the bacteriorhodopsin trimer in explicit lipid/water environment (English)

1 reference

19 September 2017

3

Klaus Gerwert

1 reference

19 September 2017

2

Jürgen Schlitter

1 reference

19 September 2017

Christian Kandt

1

1 reference

PMC publication ID

1303921

19 September 2017

language of work or name

English

0 references

publication date

1 February 2004

1 reference

19 September 2017

1 reference

19 September 2017

86

1 reference

19 September 2017

2

1 reference

19 September 2017

705-717

1 reference

Subsecond proton-hole propagation in bacteriorhodopsin

19 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303921

Structural changes during the formation of early intermediates in the bacteriorhodopsin photocycle

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303921

Water permeation across biological membranes: mechanism and dynamics of aquaporin-1 and GlpF.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303921

Simultaneous monitoring of light-induced changes in protein side-group protonation, chromophore isomerization, and backbone motion of bacteriorhodopsin by time-resolved Fourier-transform infrared spectroscopy

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303921

pKa calculations suggest storage of an excess proton in a hydrogen-bonded water network in bacteriorhodopsin

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303921

Residence times of water molecules in the hydration sites of myoglobin

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303921

Evidence for a perturbation of arginine-82 in the bacteriorhodopsin photocycle from time-resolved infrared spectra

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303921

Structural alterations for proton translocation in the M state of wild-type bacteriorhodopsin

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303921

Proton and electron transfer in bacterial reaction centers

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303921

Progress toward an explicit mechanistic model for the light-driven pump, bacteriorhodopsin

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303921

Protein, lipid and water organization in bacteriorhodopsin crystals: a molecular view of the purple membrane at 1.9 A resolution

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303921

Structure of bacteriorhodopsin at 1.55 A resolution

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303921

Alamethicin helices in a bilayer and in solution: molecular dynamics simulations

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303921

Structure at 2.7 A resolution of the Paracoccus denitrificans two-subunit cytochrome c oxidase complexed with an antibody FV fragment

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303921

Molecular dynamics of individual alpha-helices of bacteriorhodopsin in dimyristol phosphatidylocholine. I. Structure and dynamics

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303921

Lipidic cubic phases: a novel concept for the crystallization of membrane proteins

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303921

SURFNET: a program for visualizing molecular surfaces, cavities, and intermolecular interactions

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303921

Molecular dynamics study of the M412 intermediate of bacteriorhodopsin

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303921

Experimental evidence for hydrogen-bonded network proton transfer in bacteriorhodopsin shown by Fourier-transform infrared spectroscopy using azide as catalyst

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303921

Structure and Fluctuations of Bacteriorhodopsin in the Purple Membrane: A Molecular Dynamics Study

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303921

Role of aspartate-96 in proton translocation by bacteriorhodopsin.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303921

Bacteriorhodopsin: a light-driven proton pump in Halobacterium Halobium

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303921

A linkage of the pKa's of asp-85 and glu-204 forms part of the reprotonation switch of bacteriorhodopsin

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303921

Electrostatic calculations of the pKa values of ionizable groups in bacteriorhodopsin

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303921

Extracting hydration sites around proteins from explicit water simulations

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303921

D38 Is an Essential Part of the Proton Translocation Pathway in Bacteriorhodopsin†

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303921

GROMACS: A message-passing parallel molecular dynamics implementation

2 December 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2804%2974149-1

Climatic impact of tropical lowland deforestation on nearby montane cloud forests

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2804%2974149-1

GROMACS 3.0: a package for molecular simulation and trajectory analysis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2804%2974149-1

A connected-cluster of hydration around myoglobin: correlation between molecular dynamics simulations and experiment

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2804%2974149-1

Bacteriorhodopsin's intramolecular proton-release pathway consists of a hydrogen-bonded network

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2804%2974149-1

10.1016/S0006-3495(04)74149-1

7 January 2021

Identifiers

DOI

1 reference

19 September 2017

1 reference

PMC publication ID

1303921

19 September 2017

PubMed publication ID

14747309

1 reference

PMC publication ID

1303921