(Q40335218)

19 September 2017

title

Modeling DNA loops using the theory of elasticity (English)

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19 September 2017

3

Klaus Schulten

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19 September 2017

1

Alexander Balaeff

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19 September 2017

L Mahadevan

2

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19 September 2017

language of work or name

English

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publication date

20 March 2006

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19 September 2017

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19 September 2017

volume

73

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19 September 2017

issue

3 Pt 1

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19 September 2017

page(s)

031919

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Enzyme-mediated DNA looping

19 September 2017

cites work

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.73.031919

DNA looping in gene regulation: from the assembly of macromolecular complexes to the control of transcriptional noise.

21 January 2018

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A gamut of loops: meandering DNA.

21 January 2018

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Structure and dynamic behavior of nucleosomes

21 January 2018

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The structure and function of the bacterial chromosome

21 January 2018

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Simulation and modeling of nucleic acid structure, dynamics and interactions

21 January 2018

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Advances in biomolecular simulations: methodology and recent applications

21 January 2018

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An introduction to the mechanics of DNA.

21 January 2018

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Conformational and thermodynamic properties of supercoiled DNA.

21 January 2018

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https://api.crossref.org/works/10.1103%2FPHYSREVE.73.031919

Modeling superhelical DNA: recent analytical and dynamic approaches.

21 January 2018

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https://api.crossref.org/works/10.1103%2FPHYSREVE.73.031919

Mechanics of DNA packaging in viruses

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.73.031919

DNA rings with multiple energy minima

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.73.031919

Implications of the dependence of the elastic properties of DNA on nucleotide sequence.

21 January 2018

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Theory of self-contact in Kirchhoff rods with applications to supercoiling of knotted and unknotted DNA plasmids

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.73.031919

Structural dynamics of the lac repressor-DNA complex revealed by a multiscale simulation

21 January 2018

1 reference

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The influence of salt on the structure and energetics of supercoiled DNA

21 January 2018

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Modeling of long-range electrostatic interactions in DNA.

21 January 2018

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Electrostatic-undulatory theory of plectonemically supercoiled DNA.

21 January 2018

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The structural basis of DNA flexibility

21 January 2018

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DNA sequence-dependent deformability deduced from protein-DNA crystal complexes

21 January 2018

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Sequence-dependent motions of DNA: a normal mode analysis at the base-pair level

21 January 2018

1 reference

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Influence of fluctuations on DNA curvature. A comparison of flexible and static wedge models of intrinsically bent DNA.

21 January 2018

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Crystal structure of the lactose operon repressor and its complexes with DNA and inducer

21 January 2018

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A standard reference frame for the description of nucleic acid base-pair geometry.

21 January 2018

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Importance of DNA stiffness in protein-DNA binding specificity

21 January 2018

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21 January 2018

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Stress-induced structural transitions in DNA and proteins

21 January 2018

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Effect of bending strain on the torsion elastic constant of DNA.

21 January 2018

1 reference

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Ionic effects on the elasticity of single DNA molecules

21 January 2018

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Statistical mechanics of sequence-dependent circular DNA and its application for DNA cyclization

21 January 2018

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Fluorescence resonance energy transfer over approximately 130 basepairs in hyperstable lac repressor-DNA loops

21 January 2018

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Elastic stability of DNA configurations. II. Supercoiled plasmids with self-contact.

21 January 2018

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Structural transitions and elasticity from torque measurements on DNA.

21 January 2018

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The molecular theory of polyelectrolyte solutions with applications to the electrostatic properties of polynucleotides

21 January 2018

1 reference

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Structural basis for cooperative DNA binding by CAP and lac repressor.

21 January 2018

1 reference

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The elasticity of a single supercoiled DNA molecule

21 January 2018

1 reference

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Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA molecules

21 January 2018

1 reference

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Simplification of DNA topology below equilibrium values by type II topoisomerases

21 January 2018

1 reference

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The elastic rod model for DNA and its application to the tertiary structure of DNA minicircles in mononucleosomes

21 January 2018

1 reference

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Steered molecular dynamics and mechanical functions of proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.73.031919

Catabolite activator protein: DNA binding and transcription activation

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.73.031919

DNA looping and lac repressor-CAP interaction.

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.73.031919

Basal transcription factors

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.73.031919

VMD: visual molecular dynamics

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.73.031919

Fluctuations and supercoiling of DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.73.031919

10.1103/PHYSREVE.73.031919

21 January 2018

Identifiers

DOI

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19 September 2017

0 references

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