(Q40353549)

19 September 2017

A Comparison of Variant Calling Pipelines Using Genome in a Bottle as a Reference (English)

1 reference

19 September 2017

Adam Cornish

1

0 references

Chittibabu Guda

object named as

Chittibabu Guda

series ordinal

2

0 references

language of work or name

English

0 references

publication date

11 October 2015

1 reference

BioMed Research International

19 September 2017

1 reference

19 September 2017

2015

1 reference

19 September 2017

456479

1 reference

Creative Commons Attribution 3.0 Unported

19 September 2017

start time

1 January 2015

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

cites work

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1 reference

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Variant detection sensitivity and biases in whole genome and exome sequencing

22 September 2017

1 reference

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Exome sequencing from nanogram amounts of starting DNA: comparing three approaches

22 September 2017

1 reference

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Diagnostic clinical genome and exome sequencing

22 September 2017

1 reference

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Performance comparison of four exome capture systems for deep sequencing

22 September 2017

1 reference

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MOSAIK: a hash-based algorithm for accurate next-generation sequencing short-read mapping

22 September 2017

1 reference

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Integrating human sequence data sets provides a resource of benchmark SNP and indel genotype calls

22 September 2017

1 reference

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Whole-exome sequencing: discovering genetic causes of orthopaedic disorders

22 September 2017

1 reference

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Diagnostic exome sequencing: a new paradigm in neurology

22 September 2017

1 reference

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Variant callers for next-generation sequencing data: a comparison study

22 September 2017

1 reference

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A support vector machine for identification of single-nucleotide polymorphisms from next-generation sequencing data

22 September 2017

1 reference

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Bioinformatics interpretation of exome sequencing: blood cancer

22 September 2017

1 reference

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Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples

22 September 2017

1 reference

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SNP calling, genotype calling, and sample allele frequency estimation from New-Generation Sequencing data

22 September 2017

1 reference

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Fast gapped-read alignment with Bowtie 2

22 September 2017

1 reference

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VarScan 2: somatic mutation and copy number alteration discovery in cancer by exome sequencing

22 September 2017

1 reference

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Exome sequencing as a tool for Mendelian disease gene discovery

22 September 2017

1 reference

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SNVer: a statistical tool for variant calling in analysis of pooled or individual next-generation sequencing data

22 September 2017

1 reference

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A framework for variation discovery and genotyping using next-generation DNA sequencing data

22 September 2017

1 reference

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SHRiMP2: sensitive yet practical SHort Read Mapping

22 September 2017

1 reference

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A map of human genome variation from population-scale sequencing

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4619817

Stampy: a statistical algorithm for sensitive and fast mapping of Illumina sequence reads

22 September 2017

1 reference

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Dindel: accurate indel calls from short-read data

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4619817

mrsFAST: a cache-oblivious algorithm for short-read mapping.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4619817

Microindel detection in short-read sequence data

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4619817

SNVMix: predicting single nucleotide variants from next-generation sequencing of tumors

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4619817

The Sequence Alignment/Map format and SAMtools

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4619817

Fast and accurate short read alignment with Burrows-Wheeler transform

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4619817

SNP detection for massively parallel whole-genome resequencing

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4619817

CUSHAW3: sensitive and accurate base-space and color-space short-read alignment with hybrid seeding

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4619817

Next generation sequencing technology: Advances and applications.

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4619817

Next-generation sequencing (NGS) as a diagnostic tool for retinal degeneration reveals a much higher detection rate in early-onset disease

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4619817

20 August 2018

Identifiers

DOI

10.1155/2015/456479

1 reference

19 September 2017

1 reference

PMC publication ID

4619817

19 September 2017

PubMed publication ID

26539496

1 reference

PMC publication ID

4619817