(Q40404840)

20 September 2017

Core promoter elements of eukaryotic genes have a highly distinctive mechanical property (English)

1 reference

20 September 2017

Yoshiro Fukue

1

1 reference

20 September 2017

Noriyuki Sumida

series ordinal

2

1 reference

20 September 2017

Jun-ichi Nishikawa

series ordinal

3

1 reference

20 September 2017

Takashi Ohyama

series ordinal

4

1 reference

20 September 2017

language of work or name

1 reference

1 November 2004

1 reference

20 September 2017

Nucleic Acids Research

1 reference

20 September 2017

32

1 reference

20 September 2017

19

1 reference

20 September 2017

5834-5840

1 reference

The Eukaryotic Promoter Database EPD: the impact of in silico primer extension

20 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=528791

Protein motion from non-specific to specific DNA by three-dimensional routes aided by supercoiling

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=528791

Comparison of TATA-binding protein recognition of a variant and consensus DNA promoters

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=528791

Curved DNA in promoter sequences

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=528791

DNA binding site selection by RNA polymerase II TAFs: a TAF(II)250-TAF(II)150 complex recognizes the initiator

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=528791

The initiator element: a paradigm for core promoter heterogeneity within metazoan protein-coding genes

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=528791

DNA structure in human RNA polymerase II promoters

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=528791

The Eukaryotic Promoter Database EPD.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=528791

The downstream core promoter element, DPE, is conserved from Drosophila to humans and is recognized by TAFII60 of Drosophila

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=528791

Localized DNA flexibility contributes to target site selection by DNA-bending proteins.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=528791

How proteins recognize the TATA box

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=528791

Co-crystal structure of TBP recognizing the minor groove of a TATA element

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=528791

Crystal structure of a yeast TBP/TATA-box complex

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=528791

DNA sequence requirements for transcriptional initiator activity in mammalian cells

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=528791

Organization and expression of eucaryotic split genes coding for proteins

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=528791

DNA flexibility variation may dominate DNase I cleavage

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=528791

Functional domains and upstream activation properties of cloned human TATA binding protein

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=528791

Cloning of a transcriptionally active human TATA binding factor

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=528791

DNase I-induced DNA conformation. 2 A structure of a DNase I-octamer complex

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=528791

Transcription factor TFIID induces DNA bending upon binding to the TATA element.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=528791

X-ray structure of the DNase I-d(GGTATACC)2 complex at 2.3 A resolution

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=528791

Anisotropic flexibility of DNA and the nucleosomal structure

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=528791

Bending of DNA by transcription factors

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=528791

Sequence-dependent bending propensity of DNA as revealed by DNase I: parameters for trinucleotides

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=528791

A composite upstream sequence motif potentiates tRNA gene transcription in yeast.

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=528791

Sequence-dependent DNA structure: tetranucleotide conformational maps

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=528791

DNA bendability--a novel feature in E. coli promoter recognition

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=528791

Sequence periodicities in chicken nucleosome core DNA.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=528791

Identification and distinct regulation of yeast TATA box-containing genes

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=528791

Naturally occurring nucleosome positioning signals in human exons and introns

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=528791

Dual role of DNA intrinsic curvature and flexibility in determining nucleosome stability

20 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15520466

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

DNA bends in TATA-binding protein-TATA complexes in solution are DNA sequence-dependent

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15520466

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

DNA bending is an important component of site-specific recognition by the TATA binding protein

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15520466

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKH905

1 reference

20 September 2017

1 reference

20 September 2017

PubMed publication ID

15520466

1 reference