(Q40425218)

20 September 2017

1 reference

title

Modeling mutations and homologous proteins (English)

1 reference

20 September 2017

Modelling mutations and homologous proteins (English)

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

21 May 2024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A7579655

21 May 2024

author name string

A. Sali

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A7579655

21 May 2024

language of work or name

1 reference

1 August 1995

1 reference

full work available at URL

20 September 2017

https://api.elsevier.com/content/article/PII:0958166995800743?httpAccept=text/xml

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

https://api.elsevier.com/content/article/PII:0958166995800743?httpAccept=text/plain

21 May 2024

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Current Opinion in Biotechnology

21 May 2024

published in

1 reference

20 September 2017

volume

6

1 reference

20 September 2017

issue

4

1 reference

20 September 2017

page(s)

437-451

1 reference

Knowledge-based prediction of protein structures and the design of novel molecules

20 September 2017

cites work

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From comparisons of protein sequences and structures to protein modelling and design

21 May 2024

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Comparative modeling methods: application to the family of the mammalian serine proteases

21 May 2024

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Comparative protein modelling by satisfaction of spatial restraints

21 May 2024

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Knowledge-Based Protein Modeling

21 May 2024

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Knowledge-based model building of proteins: concepts and examples

21 May 2024

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Automated comparative modelling of protein structures

21 May 2024

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Comparison of solvent-inaccessible cores of homologous proteins: definitions useful for protein modelling

21 May 2024

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Database of homology-derived protein structures and the structural meaning of sequence alignment

21 May 2024

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Structural relationships of homologous proteins as a fundamental principle in homology modeling

21 May 2024

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Comparison of conformational characteristics in structurally similar protein pairs

21 May 2024

14

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Structural features can be unconserved in proteins with similar folds. An analysis of side-chain to side-chain contacts secondary structure and accessibility.

21 May 2024

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Easy adaptation of protein structure to sequence

21 May 2024

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Monte Carlo simulations of protein folding. I. Lattice model and interaction scheme.

21 May 2024

17

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https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Modeling protein structures: construction and their applications.

21 May 2024

19

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Predicting protein crystal structures

21 May 2024

20

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Folding the main chain of small proteins with the genetic algorithm.

21 May 2024

21

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Evaluation of comparative protein modeling by MODELLER

21 May 2024

22

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https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

An evaluation of the performance of an automated procedure for comparative modelling of protein tertiary structure

21 May 2024

23

1 reference

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One thousand families for the molecular biologist

21 May 2024

24

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https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Protein superfamilies and domain superfolds

21 May 2024

25

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

A possible three-dimensional structure of bovine α-lactalbumin based on that of hen's egg-white lysozyme

21 May 2024

26

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Computation of structures of homologous proteins. .alpha.-Lactalbumin from lysozyme

21 May 2024

27

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Comparative model-building of the mammalian serine proteases

21 May 2024

28

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

A graphics model building and refinement system for macromolecules

21 May 2024

29

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Knowledge based modelling of homologous proteins, Part I: Three-dimensional frameworks derived from the simultaneous superposition of multiple structures

21 May 2024

30

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Knowledge based modelling of homologous proteins, Part II: Rules for the conformations of substituted sidechains

21 May 2024

31

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

A 3D building blocks approach to analyzing and predicting structure of proteins

21 May 2024

33

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Modelling the polypeptide backbone with 'spare parts' from known protein structures

21 May 2024

34

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Accurate modeling of protein conformation by automatic segment matching

21 May 2024

35

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

A new method for building protein conformations from sequence alignments with homologues of known structure

21 May 2024

37

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Boltzmann's principle, knowledge-based mean fields and protein folding. An approach to the computational determination of protein structures

21 May 2024

39

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Alignment and searching for common protein folds using a data bank of structural templates

21 May 2024

40

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Protein structure. Prediction of progress at last

21 May 2024

41

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

A Method to Identify Protein Sequences That Fold into a Known Three-Dimensional Structure

21 May 2024

42

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

A search for the most stable folds of protein chains

21 May 2024

43

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Generalized protein tertiary structure recognition using associative memory Hamiltonians.

21 May 2024

44

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Topology fingerprint approach to the inverse protein folding problem

21 May 2024

45

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

A new approach to protein fold recognition

21 May 2024

46

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Detection of native-like models for amino acid sequences of unknown three-dimensional structure in a data base of known protein conformations

21 May 2024

47

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Contact potential that recognizes the correct folding of globular proteins

21 May 2024

48

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

An empirical energy function for threading protein sequence through the folding motif

21 May 2024

49

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Prediction of protein structure by evaluation of sequence-structure fitness. Aligning sequences to contact profiles derived from three-dimensional structures

21 May 2024

50

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

The protein threading problem with sequence amino acid interaction preferences is NP-complete

21 May 2024

51

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Recognition of distantly related proteins through energy calculations

21 May 2024

52

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Protein structural similarities predicted by a sequence-structure compatibility method

21 May 2024

53

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Searching protein structure databases has come of age.

21 May 2024

54

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

21 May 2024

Catching a common fold

55

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Issues in searching molecular sequence databases

21 May 2024

57

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

The protein identification resource (PIR).

21 May 2024

58

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

The SWISS-PROT protein sequence data bank

21 May 2024

60

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

21 May 2024

The EMBL data library

61

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

SCOP: a structural classification of proteins database for the investigation of sequences and structures

21 May 2024

63

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Rapid and sensitive sequence comparison with FASTP and FASTA

21 May 2024

64

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Basic local alignment search tool

21 May 2024

65

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Recognition of distantly related protein sequences using conserved motifs and neural networks

21 May 2024

66

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Protein family classification based on searching a database of blocks

21 May 2024

67

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Hidden Markov models in computational biology. Applications to protein modeling

21 May 2024

68

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Improved alignment of weakly homologous protein sequences using structural information.

21 May 2024

70

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

The three-dimensional profile method using residue preference as a continuous function of residue environment

21 May 2024

71

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

A Structural Basis for Sequence Comparisons

21 May 2024

73

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

A data bank merging related protein structures and sequences

21 May 2024

74

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

A database of protein structure families with common folding motifs

21 May 2024

75

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Identification and classification of protein fold families

21 May 2024

76

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

21 May 2024

77

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Molecular recognition in protein families: a database of aligned three-dimensional structures of related proteins

21 May 2024

78

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Derivation of rules for comparative protein modeling from a database of protein structure alignments

21 May 2024

79

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Confidence Limits on Phylogenies: an Approach using the Bootstrap

21 May 2024

80

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Prediction of homologous protein structures based on conformational searches and energetics.

21 May 2024

83

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Protein modelling using a chimera reference protein derived from exons.

21 May 2024

85

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Packing of secondary structural elements in proteins. Analysis and prediction of inter-helix distances

21 May 2024

86

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

A 3-D model for the CD40 ligand predicts that it is a compact trimer similar to the tumor necrosis factors

21 May 2024

87

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Calculation of protein conformation by the build-up procedure. Application to bovine pancreatic trypsin inhibitor using limited simulated nuclear magnetic resonance data

21 May 2024

88

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Rebuilding flavodoxin from C alpha coordinates: a test study

21 May 2024

89

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Database algorithm for generating protein backbone and side-chain co-ordinates from a C alpha trace application to model building and detection of co-ordinate errors.

21 May 2024

90

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

PROBIT: A statistical approach to modeling proteins from partial coordinate data using substructure libraries

21 May 2024

91

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Application of a directed conformational search for generating 3-D coordinates for protein structures from alpha-carbon coordinates

21 May 2024

92

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

The building of protein structures from alpha-carbon coordinates

21 May 2024

93

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Building protein backbones from C alpha coordinates.

21 May 2024

94

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Efficient algorithm for the reconstruction of a protein backbone from the ?-carbon coordinates

21 May 2024

95

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Reconstruction of protein conformations from estimated positions of the C alpha coordinates

21 May 2024

96

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

A molecular dynamics approach for the generation of complete protein structures from limited coordinate data.

21 May 2024

97

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Fast and simple Monte Carlo algorithm for side chain optimization in proteins: application to model building by homology

21 May 2024

98

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

A novel search method for protein sequence--structure relations using property profiles

21 May 2024

99

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Definition of general topological equivalence in protein structures. A procedure involving comparison of properties and relationships through simulated annealing and dynamic programming

21 May 2024

100

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Adaptability of restrained molecular dynamics for tertiary structure prediction: application to Crotalus atrox venom phospholipase A2.

21 May 2024

101

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Modeling the intact form of the alpha 1-proteinase inhibitor.

21 May 2024

102

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

A novel approach to prediction of the 3-dimensional structures of protein backbones by neural networks

21 May 2024

103

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

A novel parameterization scheme for energy equations and its use to calculate the structure of protein molecules

21 May 2024

105

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

An automated method for modeling proteins on known templates using distance geometry

21 May 2024

106

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Homology modeling of divergent proteins

21 May 2024

107

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Prediction of the three-dimensional structures of the biotinylated domain from yeast pyruvate carboxylase and of the lipoylated H-protein from the pea leaf glycine cleavage system: a new automated method for the prediction of protein tertiary struct

21 May 2024

108

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Comparative protein modelling by satisfaction of spatial restraints

21 May 2024

110

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

A variable gap penalty function and feature weights for protein 3-D structure comparisons

21 May 2024

111

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

CHARMM: A program for macromolecular energy, minimization, and dynamics calculations

21 May 2024

112

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Calculation of protein conformations by proton-proton distance constraints. A new efficient algorithm

21 May 2024

113

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Protein fold refinement: building models from idealized folds using motif constraints and multiple sequence data

21 May 2024

115

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Packing and recognition of protein structural elements: a new approach applied to the 4-helix bundle of myohemerythrin

21 May 2024

116

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

A geometrical constraint approach for reproducing the native backbone conformation of a protein.

21 May 2024

117

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Secondary structure formation in model polypeptide chains.

21 May 2024

118

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Compensating changes in protein multiple sequence alignments

21 May 2024

119

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

21 May 2024

120

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Calculation of conformational ensembles from potentials of mean force. An approach to the knowledge-based prediction of local structures in globular proteins.

21 May 2024

121

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Solution structure of neuronal bungarotoxin determined by two-dimensional NMR spectroscopy: calculation of tertiary structure using systematic homologous model building, dynamical simulated annealing, and restrained molecular dynamics

21 May 2024

122

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Molecular basis of mammalian sexual determination: activation of Müllerian inhibiting substance gene expression by SRY.

21 May 2024

123

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

An algorithm for determining the conformation of polypeptide segments in proteins by systematic search

21 May 2024

125

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Prediction of the folding of short polypeptide segments by uniform conformational sampling

21 May 2024

126

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Predicting antibody hypervariable loop conformations. II: Minimization and molecular dynamics studies of MCPC603 from many randomly generated loop conformations

21 May 2024

127

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Modeling antibody hypervariable loops: a combined algorithm.

21 May 2024

128

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

The predicted structure of immunoglobulin D1.3 and its comparison with the crystal structure

21 May 2024

129

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Modeling of globular proteins. A distance-based data search procedure for the construction of insertion/deletion regions and Pro----non-Pro mutations

21 May 2024

130

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Structure of antibody hypervariable loops reproduced by a conformational search algorithm

21 May 2024

131

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Conformation of β-hairpins in protein structures

21 May 2024

132

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Conformations of immunoglobulin hypervariable regions

21 May 2024

133

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Modeling the anti-CEA antibody combining site by homology and conformational search

21 May 2024

135

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Fragment ranking in modelling of protein structure. Conformationally constrained environmental amino acid substitution tables.

21 May 2024

136

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Comparison of systematic search and database methods for constructing segments of protein structure

21 May 2024

138

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Improvement of turn structure prediction by molecular dynamics: a case study of alpha 1-purothionin

21 May 2024

139

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Common features of the conformations of antigen-binding loops in immunoglobulins and application to modeling loop conformations

21 May 2024

140

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Modeling of protein loops by simulated annealing

21 May 2024

141

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Development of an extended simulated annealing method: Application to the modeling of complementary determining regions of immunoglobulins

21 May 2024

142

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Modeling the antigen combining site of an anti-dinitrophenyl antibody, ANO2

21 May 2024

143

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Determining protein loop conformation using scaling-relaxation techniques

21 May 2024

144

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Multiple copy sampling in protein loop modeling: computational efficiency and sensitivity to dihedral angle perturbations

21 May 2024

145

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Predicting antibody hypervariable loop conformation. I. Ensembles of random conformations for ringlike structures

21 May 2024

146

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Modeling protein loops using a phi i + 1, psi i dimer database

21 May 2024

147

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

The crystal structure of an engineered monomeric triosephosphate isomerase, monoTIM: the correct modelling of an eight-residue loop

21 May 2024

149

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

AMBER: Assisted model building with energy refinement. A general program for modeling molecules and their interactions

21 May 2024

150

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Simultaneous modeling of multiple loops in proteins

21 May 2024

151

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

Application of a self-consistent mean field theory to predict protein side-chains conformation and estimate their conformational entropy

21 May 2024

152

1 reference

https://api.crossref.org/works/10.1016/0958-1669(95)80074-3

A self consistent mean field approach to simultaneous gap closure and side-chain positioning in homology modelling

21 May 2024

153

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21 May 2024

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A revised set of potentials for beta-turn formation in proteins

21 May 2024

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Analysis of two-residue turns in proteins

21 May 2024

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Biased probability Monte Carlo conformational searches and electrostatic calculations for peptides and proteins

21 May 2024

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Analysis of insertions/deletions in protein structures

21 May 2024

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Empirical and structural models for insertions and deletions in the divergent evolution of proteins.

21 May 2024

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Tertiary templates for proteins. Use of packing criteria in the enumeration of allowed sequences for different structural classes

21 May 2024

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Analysis of side-chain orientations in homologous proteins

21 May 2024

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Construction of side-chains in homology modelling. Application to the C-terminal lobe of rhizopuspepsin

21 May 2024

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Calculating three-dimensional changes in protein structure due to amino-acid substitutions: the variable region of immunoglobulins

21 May 2024

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Analysis of the relationship between side-chain conformation and secondary structure in globular proteins

21 May 2024

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The dead-end elimination theorem and its use in protein side-chain positioning

21 May 2024

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The fuzzy-end elimination theorem: correctly implementing the side chain placement algorithm based on the dead-end elimination theorem

21 May 2024

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Backbone-dependent rotamer library for proteins. Application to side-chain prediction

21 May 2024

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Conformational analysis of the backbone-dependent rotamer preferences of protein sidechains

21 May 2024

170

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Modeling side-chain conformation for homologous proteins using an energy-based rotamer search

21 May 2024

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Predicting local structural changes that result from point mutations

21 May 2024

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Homology modelling of annexin I: implicit solvation improves side-chain prediction and combination of evaluation criteria allows recognition of different types of conformational error

21 May 2024

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Prediction of protein side-chain conformations from local three-dimensional homology relationships

21 May 2024

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A study of simulated annealing protocols for use with molecular dynamics in protein structure prediction

21 May 2024

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Accurate prediction of the stability and activity effects of site-directed mutagenesis on a protein core

21 May 2024

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Prediction of protein side-chain conformation by packing optimization.

21 May 2024

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Predicting protein mutant energetics by self-consistent ensemble optimization.

21 May 2024

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Multiple copy sampling: rigid versus flexible protein.

21 May 2024

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Determinants of protein side-chain packing

21 May 2024

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Energy minimization method using automata network for sequence and side-chain conformation prediction from given backbone geometry.

21 May 2024

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Disulphide bridges in globular proteins

21 May 2024

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Stereochemical modeling of disulfide bridges. Criteria for introduction into proteins by site-directed mutagenesis

21 May 2024

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Modelling multiple disulphide loop containing polypeptides by random conformation generation. The test cases of alpha-conotoxin GI and endothelin I

21 May 2024

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21 May 2024

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Analysis and classification of disulphide connectivity in proteins. The entropic effect of cross-linkage

21 May 2024

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Design of interchain disulfide bonds in the framework region of the Fv fragment of the monoclonal antibody B3

21 May 2024

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Free energy simulations: the meaning of the individual contributions from a component analysis.

21 May 2024

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Can the stability of protein mutants be predicted by free energy calculations?

21 May 2024

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A method to configure protein side-chains from the main-chain trace in homology modelling

21 May 2024

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The consistency principle in protein structure and pathways of folding

21 May 2024

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Rotamers: to be or not to be? An analysis of amino acid side-chain conformations in globular proteins.

21 May 2024

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The crystal structure of a mutant protein with altered but improved hydrophobic core packing

21 May 2024

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PROCHECK: a program to check the stereochemical quality of protein structures

21 May 2024

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Stereochemical quality of protein structure coordinates

21 May 2024

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An analysis of incorrectly folded protein models. Implications for structure predictions.

21 May 2024

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Criteria that discriminate between native proteins and incorrectly folded models

21 May 2024

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Protein folding. Effect of packing density on chain conformation

21 May 2024

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Correctly folded proteins make twice as many hydrophobic contacts

21 May 2024

202

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Protein model structure evaluation using the solvation free energy of folding

21 May 2024

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Evaluation of protein models by atomic solvation preference.

21 May 2024

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Polarity as a criterion in protein design

21 May 2024

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Empirical solvation models can be used to differentiate native from near-native conformations of bovine pancreatic trypsin inhibitor

21 May 2024

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Polar and nonpolar atomic environments in the protein core: implications for folding and binding

21 May 2024

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The frequency of ion-pair substructures in proteins is quantitatively related to electrostatic potential: a statistical model for nonbonded interactions

21 May 2024

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Verification of protein structures: patterns of nonbonded atomic interactions

21 May 2024

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Assessment of protein models with three-dimensional profiles

21 May 2024

210

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Identification of native protein folds amongst a large number of incorrect models. The calculation of low energy conformations from potentials of mean force

21 May 2024

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Recognition of errors in three-dimensional structures of proteins

21 May 2024

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Comparative modelling of major house dust mite allergen Der p I: structure validation using an extended environmental amino acid propensity table

21 May 2024

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Acuracy of refined protein structures. II. Comparison of four independently refined models of human interleukin 1beta

21 May 2024

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Exploring the limits of precision and accuracy of protein structures determined by nuclear magnetic resonance spectroscopy.

21 May 2024

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An assessment of the precision and accuracy of protein structures determined by NMR. Dependence on distance errors.

21 May 2024

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A mutant T4 lysozyme displays five different crystal conformations

21 May 2024

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Packaging of proteases and proteoglycans in the granules of mast cells and other hematopoietic cells. A cluster of histidines on mouse mast cell protease 7 regulates its binding to heparin serglycin proteoglycans

21 May 2024

219

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Structure-based inhibitor design by using protein models for the development of antiparasitic agents

21 May 2024

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Conversion of the substrate specificity of mouse proteinase granzyme B.

21 May 2024

221

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Comparison of homology models with the experimental structure of a novel serine protease

21 May 2024

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21 May 2024

Identifiers

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20 September 2017

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