(Q40829773)

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Multimeric threading-based prediction of protein-protein interactions on a genomic scale: application to the Saccharomyces cerevisiae proteome

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

24 September 2017

Multimeric threading-based prediction of protein-protein interactions on a genomic scale: application to the Saccharomyces cerevisiae proteome (English)

1 reference

Europe PubMed Central

PMC publication ID

24 September 2017

Saccharomyces cerevisiae

1 reference

based on heuristic

inferred from title

protein-protein interaction

1 reference

based on heuristic

inferred from title

Jeffrey Skolnick

4

object named as

Jeffrey Skolnick

1 reference

Europe PubMed Central

PMC publication ID

24 September 2017

author name string

Long Lu

1

1 reference

Europe PubMed Central

PMC publication ID

24 September 2017

Adrian K Arakaki

2

1 reference

Europe PubMed Central

PMC publication ID

24 September 2017

Hui Lu

3

1 reference

Europe PubMed Central

PMC publication ID

24 September 2017

language of work or name

1 reference

based on heuristic

inferred from title

publication date

1 June 2003

1 reference

Europe PubMed Central

PMC publication ID

24 September 2017

Genome Research

1 reference

Europe PubMed Central

PMC publication ID

24 September 2017

13

1 reference

Europe PubMed Central

PMC publication ID

24 September 2017

6A

1 reference

Europe PubMed Central

PMC publication ID

24 September 2017

1146-1154

1 reference

Europe PubMed Central

PMC publication ID

24 September 2017

CYGD: the Comprehensive Yeast Genome Database

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403642

24 September 2017

Development of unified statistical potentials describing protein-protein interactions.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403642

24 September 2017

MULTIPROSPECTOR: an algorithm for the prediction of protein-protein interactions by multimeric threading

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403642

24 September 2017

Disruptor of telomeric silencing-1 is a chromatin-specific histone H3 methyltransferase.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403642

24 September 2017

Lysine methylation within the globular domain of histone H3 by Dot1 is important for telomeric silencing and Sir protein association

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403642

24 September 2017

Comparative assessment of large-scale data sets of protein-protein interactions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403642

24 September 2017

Interrogating protein interaction networks through structural biology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403642

24 September 2017

Small nucleolar RNAs: versatile trans-acting molecules of ancient evolutionary origin.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403642

24 September 2017

Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403642

24 September 2017

Functional organization of the yeast proteome by systematic analysis of protein complexes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403642

24 September 2017

The KEGG databases at GenomeNet

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403642

24 September 2017

Systematic genetic analysis with ordered arrays of yeast deletion mutants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403642

24 September 2017

Correlation between transcriptome and interactome mapping data from Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403642

24 September 2017

Global analysis of protein activities using proteome chips

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403642

24 September 2017

An unexpected, conserved element of the U3 snoRNA is required for Mpp10p association

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403642

24 September 2017

Protein--protein interaction maps: a lead towards cellular functions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403642

24 September 2017

A comprehensive two-hybrid analysis to explore the yeast protein interactome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403642

24 September 2017

The Ndc80p complex from Saccharomyces cerevisiae contains conserved centromere components and has a function in chromosome segregation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403642

24 September 2017

Defrosting the frozen approximation: PROSPECTOR--a new approach to threading.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403642

24 September 2017

Role for the silencing protein Dot1 in meiotic checkpoint control

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403642

24 September 2017

Predicting protein function by genomic context: quantitative evaluation and qualitative inferences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403642

24 September 2017

A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403642

24 September 2017

Detecting protein function and protein-protein interactions from genome sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403642

24 September 2017

Assigning protein functions by comparative genome analysis: Protein phylogenetic profiles

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403642

24 September 2017

Protein Data Bank (PDB): database of three-dimensional structural information of biological macromolecules

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403642

24 September 2017

The use of gene clusters to infer functional coupling

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403642

24 September 2017

Correlation between protein and mRNA abundance in yeast

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403642

24 September 2017

Synthetic lethal interactions with conditional poly(A) polymerase alleles identify LCP5, a gene involved in 18S rRNA maturation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403642

24 September 2017

Identification of high-copy disruptors of telomeric silencing in Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403642

24 September 2017

Mpp10p, a U3 small nucleolar ribonucleoprotein component required for pre-18S rRNA processing in yeast

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403642

24 September 2017

Modelling protein docking using shape complementarity, electrostatics and biochemical information

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403642

24 September 2017

The protein kinases of budding yeast: six score and more

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403642

24 September 2017

Saccharomyces cerevisiae Ku70 potentiates illegitimate DNA double-strand break repair and serves as a barrier to error-prone DNA repair pathways

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403642

24 September 2017

GCR1, a transcriptional activator in Saccharomyces cerevisiae, complexes with RAP1 and can function without its DNA binding domain

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403642

24 September 2017

PUZZLE: a new method for automated protein docking based on surface shape complementarity.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403642

24 September 2017

Protein-protein interaction and enzymatic activity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403642

24 September 2017

Calculation of the total electrostatic energy of a macromolecular system: solvation energies, binding energies, and conformational analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403642

24 September 2017

Enhancement of the GDP-GTP exchange of RAS proteins by the carboxyl-terminal domain of SCD25.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403642

24 September 2017

Protein-protein recognition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403642

25 September 2017

In silico two-hybrid system for the selection of physically interacting protein pairs.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403642

19 August 2018

Yeast Ku protein plays a direct role in telomeric silencing and counteracts inhibition by rif proteins.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403642

19 August 2018

Mutation of yeast Ku genes disrupts the subnuclear organization of telomeres

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403642

19 August 2018

Hydrophobic docking: a proposed enhancement to molecular recognition techniques.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403642

19 August 2018

Interaction and domain networks of yeast

1 reference

https://pubmed.ncbi.nlm.nih.gov/12799350

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mechanism of interaction between Ku protein and DNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/12799350

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

MSH5, a novel MutS homolog, facilitates meiotic reciprocal recombination between homologs in Saccharomyces cerevisiae but not mismatch repair

1 reference

https://pubmed.ncbi.nlm.nih.gov/12799350

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1101/GR.1145203

1 reference

Europe PubMed Central

PMC publication ID

24 September 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

24 September 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

24 September 2017

ResearchGate publication ID

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