(Q40829808)

24 September 2017

Assessment of SAGE in transcript identification (English)

1 reference

24 September 2017

Assessment of SAGE in Transcript Identification (English)

1 reference

1 January 2024

1 reference

1 January 2024

3

Steven J. M. Jones

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A12743019

1 January 2024

author name string

Erin D. Pleasance

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A12743019

1 January 2024

Marco A. Marra

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A12743019

1 January 2024

language of work or name

English

1 reference

National Center for Biotechnology Information

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=12743019

1 January 2024

publication date

12 May 2003

1 reference

full work available at URL

24 September 2017

http://genome.cshlp.org/content/13/6a/1203.full.pdf

file format

Portable Document Format

online access status

open access

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A12743019

https://europepmc.org/articles/PMC403648

1 January 2024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A12743019

https://europepmc.org/articles/PMC403648?pdf=render

1 January 2024

file format

Portable Document Format

online access status

open access

content deliverer

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A12743019

https://doi.org/10.1101/gr.873003

1 January 2024

online access status

open access

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A12743019

https://syndication.highwire.org/content/doi/10.1101/gr.873003

1 January 2024

1 reference

1 January 2024

1 reference

24 September 2017

13

1 reference

24 September 2017

6A

1 reference

24 September 2017

1203-1215

1 reference

Genes expressed in the Drosophila head reveal a role for fat cells in sex-specific physiology

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403648

Temperature-regulated transcription in the pathogenic fungus Cryptococcus neoformans.

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403648

The Drosophila gene collection: identification of putative full-length cDNAs for 70% of D. melanogaster genes

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403648

Using the transcriptome to annotate the genome

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403648

BLAT—The BLAST-Like Alignment Tool

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403648

Molecular characteristics of non-small cell lung cancer

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403648

Changes in gene expression associated with developmental arrest and longevity in Caenorhabditis elegans.

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403648

Evaluation of gene-finding programs on mammalian sequences

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403648

Heterogeneity in polyadenylation cleavage sites in mammalian mRNA sequences: implications for SAGE analysis.

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403648

Initial sequencing and analysis of the human genome

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403648

Gene duplication and the structure of eukaryotic genomes

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403648

The Sequence of the Human Genome

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403648

WormBase: network access to the genome and biology of Caenorhabditis elegans

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403648

Gene discovery using computational and microarray analysis of transcription in the Drosophila melanogaster testis

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403648

SAGEmap: a public gene expression resource

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403648

The genome sequence of Drosophila melanogaster

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403648

Generation of longer cDNA fragments from serial analysis of gene expression tags for gene identification

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403648

Serial microanalysis of renal transcriptomes.

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403648

In silico detection of control signals: mRNA 3'-end-processing sequences in diverse species

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403648

The mammalian gene collection

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403648

Scriptable access to the Caenorhabditis elegans genome sequence and other ACEDB databases

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403648

Genome sequence of the nematode C. elegans: a platform for investigating biology

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403648

Base-calling of automated sequencer traces using phred. I. Accuracy assessment

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403648

Pieces of the puzzle: expressed sequence tags and the catalog of human genes

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403648

Characterization of the yeast transcriptome

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403648

A workbench for large-scale sequence homology analysis

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403648

Serial analysis of gene expression

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403648

Basic local alignment search tool

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403648

SAGE transcript profiles for p53-dependent growth regulation

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403648

The FlyBase database of the Drosophila genome projects and community literature.

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403648

The genomic response of the Drosophila embryo to JNK signaling.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403648

Identification of differentially expressed genes by serial analysis of gene expression in human prostate cancer

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403648

Analysis of human transcriptomes.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403648

EST_GENOME: a program to align spliced DNA sequences to unspliced genomic DNA.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403648

Correct identification of genes from serial analysis of gene expression tag sequences

19 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/12743019

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

A SAGE Approach to Discovery of Genes Involved in Autophagic Cell Death

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/12743019

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

A modified serial analysis of gene expression that generates longer sequence tags by nonpalindromic cohesive linker ligation

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/12743019

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

A Workbench for large-scale sequence homology analysis

28

1 reference

Scriptable Access to theCaenorhabditis elegansGenome Sequence and Other ACEDB Databases

1 January 2024

32

1 reference

1 January 2024

39

61

4283

2001

1 reference

1 January 2024

Identifiers

DOI

10.1101/GR.873003

1 reference

24 September 2017

1 reference

24 September 2017

1 reference