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The human transmembrane proteome
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scholarly article
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stated in
Europe PubMed Central
PMCID
4445273
retrieved
24 September 2017
title
The human transmembrane proteome
(English)
1 reference
stated in
Europe PubMed Central
PMCID
4445273
retrieved
24 September 2017
main subject
transmembrane protein
0 references
author
László Dobson
series ordinal
1
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stated in
Europe PubMed Central
PMCID
4445273
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26018427%20AND%20SRC:MED&resulttype=core&format=json
retrieved
12 June 2020
Gábor E. Tusnády
series ordinal
3
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Europe PubMed Central
PMCID
4445273
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26018427%20AND%20SRC:MED&resulttype=core&format=json
retrieved
12 June 2020
author name string
István Reményi
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2
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Europe PubMed Central
PMCID
4445273
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26018427%20AND%20SRC:MED&resulttype=core&format=json
retrieved
12 June 2020
publication date
28 May 2015
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Europe PubMed Central
PMCID
4445273
retrieved
24 September 2017
published in
Biology Direct
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stated in
Europe PubMed Central
PMCID
4445273
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26018427%20AND%20SRC:MED&resulttype=core&format=json
retrieved
12 June 2020
volume
10
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Europe PubMed Central
PMCID
4445273
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26018427%20AND%20SRC:MED&resulttype=core&format=json
retrieved
12 June 2020
page(s)
31
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Europe PubMed Central
PMCID
4445273
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26018427%20AND%20SRC:MED&resulttype=core&format=json
retrieved
12 June 2020
copyright license
Creative Commons Attribution 4.0 International
start time
28 May 2015
1 reference
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April 2022 Public Data File from Crossref
copyright status
copyrighted
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exact match
https://scigraph.springernature.com/pub.10.1186/s13062-015-0061-x
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cites work
Reliability of nine programs of topological predictions and their application to integral membrane channel and carrier proteins
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4445273
retrieved
24 September 2017
HMPAS: Human Membrane Protein Analysis System
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4445273
retrieved
24 September 2017
The cell surface proteome of Entamoeba histolytica
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4445273
retrieved
24 September 2017
WEB-based GEne SeT AnaLysis Toolkit (WebGestalt): update 2013
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4445273
retrieved
24 September 2017
How many signal peptides are there in bacteria?
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4445273
retrieved
24 September 2017
Coordinating the impact of structural genomics on the human α-helical transmembrane proteome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4445273
retrieved
24 September 2017
PDBTM: Protein Data Bank of transmembrane proteins after 8 years
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4445273
retrieved
24 September 2017
CMWeb: an interactive on-line tool for analysing residue-residue contacts and contact prediction methods.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4445273
retrieved
24 September 2017
Three-dimensional structures of membrane proteins from genomic sequencing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4445273
retrieved
24 September 2017
SignalP 4.0: discriminating signal peptides from transmembrane regions
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4445273
retrieved
24 September 2017
The cell surface proteome of human mesenchymal stromal cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4445273
retrieved
24 September 2017
Global expression of cell surface proteins in embryonic stem cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4445273
retrieved
24 September 2017
Topology prediction of helical transmembrane proteins: how far have we reached?
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4445273
retrieved
24 September 2017
Proteome analysis of the surface of Trichomonas vaginalis reveals novel proteins and strain-dependent differential expression.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4445273
retrieved
24 September 2017
Predicting transmembrane helix packing arrangements using residue contacts and a force-directed algorithm
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4445273
retrieved
24 September 2017
CD-HIT Suite: a web server for clustering and comparing biological sequences
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4445273
retrieved
24 September 2017
Transmembrane protein topology prediction using support vector machines
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4445273
retrieved
24 September 2017
Transmembrane topology and signal peptide prediction using dynamic bayesian networks
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4445273
retrieved
24 September 2017
SPOCTOPUS: a combined predictor of signal peptides and membrane protein topology.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4445273
retrieved
24 September 2017
MemBrain: improving the accuracy of predicting transmembrane helices
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4445273
retrieved
24 September 2017
Prediction of membrane-protein topology from first principles
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4445273
retrieved
24 September 2017
OCTOPUS: improving topology prediction by two-track ANN-based preference scores and an extended topological grammar
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4445273
retrieved
24 September 2017
TOPDOM: database of domains and motifs with conservative location in transmembrane proteins
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4445273
retrieved
24 September 2017
TOPDB: topology data bank of transmembrane proteins
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4445273
retrieved
24 September 2017
Advantages of combined transmembrane topology and signal peptide prediction--the Phobius web server
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4445273
retrieved
24 September 2017
A global topology map of the Saccharomyces cerevisiae membrane proteome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4445273
retrieved
24 September 2017
Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4445273
retrieved
24 September 2017
Algorithms for incorporating prior topological information in HMMs: application to transmembrane proteins
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4445273
retrieved
24 September 2017
The Universal Protein Resource (UniProt): an expanding universe of protein information
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4445273
retrieved
24 September 2017
PDB_TM: selection and membrane localization of transmembrane proteins in the protein data bank
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4445273
retrieved
24 September 2017
TMDET: web server for detecting transmembrane regions of proteins by using their 3D coordinates.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4445273
retrieved
24 September 2017
Improved prediction of signal peptides: SignalP 3.0
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4445273
retrieved
24 September 2017
Transmembrane proteins in the Protein Data Bank: identification and classification.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4445273
retrieved
24 September 2017
A combined transmembrane topology and signal peptide prediction method
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4445273
retrieved
24 September 2017
Topology models for 37 Saccharomyces cerevisiae membrane proteins based on C-terminal reporter fusions and predictions
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4445273
retrieved
24 September 2017
Reliability of transmembrane predictions in whole-genome data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4445273
retrieved
24 September 2017
The HMMTOP transmembrane topology prediction server
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4445273
retrieved
24 September 2017
Initial sequencing and analysis of the human genome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4445273
retrieved
24 September 2017
The Sequence of the Human Genome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4445273
retrieved
24 September 2017
Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4445273
retrieved
24 September 2017
Machine learning approaches for the prediction of signal peptides and other protein sorting signals
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4445273
retrieved
24 September 2017
A hidden Markov model for predicting transmembrane helices in protein sequences
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4445273
retrieved
24 September 2017
Principles governing amino acid composition of integral membrane proteins: application to topology prediction
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4445273
retrieved
24 September 2017
Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4445273
retrieved
24 September 2017
PDBselect 1992-2009 and PDBfilter-select
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4445273
retrieved
15 June 2018
Experimentally constrained topology models for 51,208 bacterial inner membrane proteins
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4445273
retrieved
15 June 2018
Improved membrane protein topology prediction by domain assignments
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4445273
retrieved
15 June 2018
A comprehensive surface proteome analysis of myeloid leukemia cell lines for therapeutic antibody development.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4445273
retrieved
19 August 2018
Best alpha-helical transmembrane protein topology predictions are achieved using hidden Markov models and evolutionary information
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4445273
retrieved
19 August 2018
Experimentally based topology models for E. coli inner membrane proteins
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4445273
retrieved
19 August 2018
Computational differentiation of N-terminal signal peptides and transmembrane helices.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4445273
retrieved
19 August 2018
Reliability measures for membrane protein topology prediction algorithms.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4445273
retrieved
19 August 2018
A tutorial on hidden Markov models and selected applications in speech recognition
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1186%2FS13062-015-0061-X
retrieved
21 January 2018
Consensus predictions of membrane protein topology
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1186%2FS13062-015-0061-X
retrieved
21 January 2018
The presence of signal peptide significantly affects transmembrane topology prediction
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/26018427
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1186/S13062-015-0061-X
1 reference
stated in
Europe PubMed Central
PMCID
4445273
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26018427%20AND%20SRC:MED&resulttype=core&format=json
retrieved
12 June 2020
Dimensions Publication ID
1033420941
0 references
PMCID
4445273
1 reference
stated in
Europe PubMed Central
PMCID
4445273
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26018427%20AND%20SRC:MED&resulttype=core&format=json
retrieved
12 June 2020
PubMed ID
26018427
1 reference
stated in
Europe PubMed Central
PMCID
4445273
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26018427%20AND%20SRC:MED&resulttype=core&format=json
retrieved
12 June 2020
ResearchGate publication ID
277340441
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