(Q43094982)

13 November 2017

Best alpha-helical transmembrane protein topology predictions are achieved using hidden Markov models and evolutionary information (English)

1 reference

13 November 2017

transmembrane protein

0 references

author

Arne Elofsson

series ordinal

2

1 reference

13 November 2017

Håkan Viklund

1

1 reference

13 November 2017

1 July 2004

1 reference

13 November 2017

1 reference

13 November 2017

13

1 reference

13 November 2017

1908-1917

1 reference

13 November 2017

7

1 reference

The distribution of positively charged residues in bacterial inner membrane proteins correlates with the trans-membrane topology

13 November 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279939

A combined transmembrane topology and signal peptide prediction method

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279939

Topology models for 37 Saccharomyces cerevisiae membrane proteins based on C-terminal reporter fusions and predictions

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279939

Reliability of transmembrane predictions in whole-genome data

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279939

Transmembrane helix predictions revisited

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279939

A sequence-profile-based HMM for predicting and discriminating beta barrel membrane proteins

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279939

Improved detection of homologous membrane proteins by inclusion of information from topology predictions.

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279939

The HMMTOP transmembrane topology prediction server

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279939

Evaluation of methods for the prediction of membrane spanning regions

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279939

MPtopo: A database of membrane protein topology

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279939

Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279939

25 May 2018

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279939

Divergent evolution of membrane protein topology: the Escherichia coli RnfA and RnfE homologues

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279939

Principles governing amino acid composition of integral membrane proteins: application to topology prediction

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279939

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279939

Dirichlet mixtures: a method for improved detection of weak but significant protein sequence homology

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279939

Topology prediction for helical transmembrane proteins at 86% accuracy

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279939

Hidden Markov models for sequence analysis: extension and analysis of the basic method

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279939

Improved prediction of protein secondary structure by use of sequence profiles and neural networks

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279939

A model recognition approach to the prediction of all-helical membrane protein structure and topology

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279939

Prediction of transmembrane segments in proteins utilising multiple sequence alignments

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279939

TopPred II: an improved software for membrane protein structure predictions

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279939

Basic local alignment search tool

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279939

Membrane protein structure prediction. Hydrophobicity analysis and the positive-inside rule

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279939

Selection of representative protein data sets

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279939

Predicting the topology of transmembrane helical proteins using mean burial propensity and a hidden-Markov-model-based method

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279939

Reliability measures for membrane protein topology prediction algorithms.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279939

Membrane proteins: from sequence to structure

15 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15215532

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

SATCHMO: sequence alignment and tree construction using hidden Markov models

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15215532

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Transmembrane topology prediction methods: a re-assessment and improvement by a consensus method using a dataset of experimentally-characterized transmembrane topologies

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15215532

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1110/PS.04625404

1 reference

13 November 2017

1 reference

13 November 2017

1 reference

PMCID

2279939