(Q40912243)

24 September 2017

1 reference

title

Mitochondrial DNA maintenance in vertebrates (English)

1 reference

24 September 2017

0 references

G. S. Shadel

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A9242913

9 November 2024

D. A. Clayton

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A9242913

9 November 2024

language of work or name

English

1 reference

National Center for Biotechnology Information

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=9242913

9 November 2024

publication date

1 January 1997

1 reference

24 September 2017

1997

1 reference

National Center for Biotechnology Information

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=9242913

full work available at URL

9 November 2024

number of pages

27

1 reference

based on heuristic

inferred from page(s)

https://www.annualreviews.org/doi/pdf/10.1146/annurev.biochem.66.1.409

1 reference

https://api.crossref.org/works/10.1146/ANNUREV.BIOCHEM.66.1.409

Annual Review of Biochemistry

9 November 2024

published in

1 reference

24 September 2017

volume

66

1 reference

24 September 2017

page(s)

409-435

1 reference

Diseases of the mitochondrial DNA.

24 September 2017

cites work

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9 November 2024

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Replication of animal mitochondrial DNA.

9 November 2024

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In vitro replication of human mitochondrial DNA: accurate initiation at the origin of light-strand synthesis

9 November 2024

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Precise identification of individual promoters for transcription of each strand of human mitochondrial DNA.

9 November 2024

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Precise assignment of the light-strand promoter of mouse mitochondrial DNA: a functional promoter consists of multiple upstream domains

9 November 2024

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Purification and characterization of human mitochondrial transcription factor 1.

9 November 2024

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Promoter selection in human mitochondria involves binding of a transcription factor to orientation-independent upstream regulatory elements

9 November 2024

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Flexible recognition of rapidly evolving promoter sequences by mitochondrial transcription factor 1.

9 November 2024

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Human mitochondrial transcription factor A and promoter spacing integrity are required for transcription initiation.

9 November 2024

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Identification of transcriptional regulatory elements in human mitochondrial DNA by linker substitution analysis

9 November 2024

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The HMG-1 box protein family: classification and functional relationships.

9 November 2024

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HMG domain proteins: architectural elements in the assembly of nucleoprotein structures

9 November 2024

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Yeast mitochondrial RNA polymerase is homologous to those encoded by bacteriophages T3 and T7.

9 November 2024

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Cloning and characterization of the Neurospora crassa cyt-5 gene. A nuclear-coded mitochondrial RNA polymerase with a polyglutamine repeat

9 November 2024

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Sequences homologous to yeast mitochondrial and bacteriophage T3 and T7 RNA polymerases are widespread throughout the eukaryotic lineage

9 November 2024

28

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https://api.crossref.org/works/10.1146/ANNUREV.BIOCHEM.66.1.409

A Saccharomyces cerevisiae mitochondrial transcription factor, sc-mtTFB, shares features with sigma factors but is functionally distinct

9 November 2024

31

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Assignment of a yeast protein necessary for mitochondrial transcription initiation

9 November 2024

32

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A close relative of the nuclear, chromosomal high-mobility group protein HMG1 in yeast mitochondria

9 November 2024

33

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Distinct roles for two purified factors in transcription of Xenopus mitochondrial DNA.

9 November 2024

34

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Priming of human mitochondrial DNA replication occurs at the light-strand promoter

9 November 2024

36

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Sequence and properties of the human KB cell and mouse L cell D-loop regions of mitochondrial DNA.

9 November 2024

38

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The ori sequences of the mitochondrial genome of a wild-type yeast strain: number, location, orientation and structure

9 November 2024

39

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https://api.crossref.org/works/10.1146/ANNUREV.BIOCHEM.66.1.409

A persistent RNA-DNA hybrid is formed during transcription at a phylogenetically conserved mitochondrial DNA sequence

9 November 2024

40

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https://api.crossref.org/works/10.1146/ANNUREV.BIOCHEM.66.1.409

Properties of a primer RNA-DNA hybrid at the mouse mitochondrial DNA leading-strand origin of replication

9 November 2024

42

1 reference

https://api.crossref.org/works/10.1146/ANNUREV.BIOCHEM.66.1.409

Formation of an RNA primer for initiation of replication of ColE1 DNA by ribonuclease H

9 November 2024

43

1 reference

https://api.crossref.org/works/10.1146/ANNUREV.BIOCHEM.66.1.409

Initiation of DNA replication at the primary origin of bacteriophage T7 by purified proteins: requirement for T7 RNA polymerase

9 November 2024

44

1 reference

https://api.crossref.org/works/10.1146/ANNUREV.BIOCHEM.66.1.409

A novel endoribonuclease cleaves at a priming site of mouse mitochondrial DNA replication

9 November 2024

45

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https://api.crossref.org/works/10.1146/ANNUREV.BIOCHEM.66.1.409

A mammalian mitochondrial RNA processing activity contains nucleus-encoded RNA.

9 November 2024

46

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https://api.crossref.org/works/10.1146/ANNUREV.BIOCHEM.66.1.409

Mouse RNAase MRP RNA is encoded by a nuclear gene and contains a decamer sequence complementary to a conserved region of mitochondrial RNA substrate.

9 November 2024

47

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Characterization of human MRP/Th RNA and its nuclear gene: full length MRP/Th RNA is an active endoribonuclease when assembled as an RNP

9 November 2024

48

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https://api.crossref.org/works/10.1146/ANNUREV.BIOCHEM.66.1.409

Bovine RNase MRP cleaves the divergent bovine mitochondrial RNA sequence at the displacement-loop region

9 November 2024

50

1 reference

https://api.crossref.org/works/10.1146/ANNUREV.BIOCHEM.66.1.409

Schizosaccharomyces pombe RNase MRP RNA is homologous to metazoan RNase MRP RNAs and may provide clues to interrelationships between RNase MRP and RNase P.

9 November 2024

51

1 reference

https://api.crossref.org/works/10.1146/ANNUREV.BIOCHEM.66.1.409

Yeast site-specific ribonucleoprotein endoribonuclease MRP contains an RNA component homologous to mammalian RNase MRP RNA and essential for cell viability

9 November 2024

52

1 reference

https://api.crossref.org/works/10.1146/ANNUREV.BIOCHEM.66.1.409

Secondary structure of RNase MRP RNA as predicted by phylogenetic comparison

9 November 2024

53

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RNase mitochondrial RNA processing correctly cleaves a novel R loop at the mitochondrial DNA leading-strand origin of replication

9 November 2024

54

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Nuclear RNase MRP processes RNA at multiple discrete sites: interaction with an upstream G box is required for subsequent downstream cleavages.

9 November 2024

55

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The RNA processing enzyme RNase MRP is identical to the Th RNP and related to RNase P.

9 November 2024

56

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https://api.crossref.org/works/10.1146/ANNUREV.BIOCHEM.66.1.409

Immunolocalization of 7-2-ribonucleoprotein in the granular component of the nucleolus

9 November 2024

57

1 reference

https://api.crossref.org/works/10.1146/ANNUREV.BIOCHEM.66.1.409

The RNA of RNase MRP is required for normal processing of ribosomal RNA.

9 November 2024

58

1 reference

https://api.crossref.org/works/10.1146/ANNUREV.BIOCHEM.66.1.409

Accurate processing of a eukaryotic precursor ribosomal RNA by ribonuclease MRP in vitro

9 November 2024

59

1 reference

https://api.crossref.org/works/10.1146/ANNUREV.BIOCHEM.66.1.409

Nuclear RNase MRP is required for correct processing of pre-5.8S rRNA in Saccharomyces cerevisiae

9 November 2024

60

1 reference

https://api.crossref.org/works/10.1146/ANNUREV.BIOCHEM.66.1.409

Evidence against a mitochondrial location of the 7-2/MRP RNA in mammalian cells

9 November 2024

61

1 reference

https://api.crossref.org/works/10.1146/ANNUREV.BIOCHEM.66.1.409

Subcellular partitioning of MRP RNA assessed by ultrastructural and biochemical analysis

9 November 2024

62

1 reference

https://api.crossref.org/works/10.1146/ANNUREV.BIOCHEM.66.1.409

Distribution of RNase MRP RNA during Xenopus laevis oogenesis

9 November 2024

63

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https://api.crossref.org/works/10.1146/ANNUREV.BIOCHEM.66.1.409

A nuclear function for RNase MRP.

9 November 2024

65

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https://api.crossref.org/works/10.1146/ANNUREV.BIOCHEM.66.1.409

A DNA binding protein from Xenopus laevis oocyte mitochondria

9 November 2024

66

1 reference

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Identification by in Organello footprinting of protein contact sites and of single-stranded DNA sequences in the regulatory region of rat mitochondrial DNA. Protein binding sites and single-stranded DNA regions in isolated rat liver mitochondria

9 November 2024

67

1 reference

https://api.crossref.org/works/10.1146/ANNUREV.BIOCHEM.66.1.409

A 67-kDa protein binding to the curved DNA in the main regulatory region of the rat mitochondrial genome

9 November 2024

68

1 reference

https://api.crossref.org/works/10.1146/ANNUREV.BIOCHEM.66.1.409

The rat liver mitochondrial DNA-protein complex: displaced single strands of replicative intermediates are protein coated

9 November 2024

69

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The complete and symmetric transcription of the main non coding region of rat mitochondrial genome: in vivo mapping of heavy and light transcripts

9 November 2024

70

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The complete nucleotide sequence of the Rattus norvegicus mitochondrial genome: cryptic signals revealed by comparative analysis between vertebrates

9 November 2024

72

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Nucleotide sequence of a cloned fragment of rat mitochondrial DNA containing the replication origin

9 November 2024

73

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A new RNA polymerase and in vitro transcription of the origin of replication from rat mitochondrial DNA.

9 November 2024

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Transcribed heteroplasmic repeated sequences in the porcine mitochondrial DNA D-loop region

9 November 2024

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Accurate in vitro transcription of Xenopus laevis mitochondrial DNA from two bidirectional promoters

9 November 2024

76

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Mapping light strand transcripts near the origin of replication ofXenopus laevis; mitochondrial DNA

9 November 2024

79

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Sequence and gene organization of the chicken mitochondrial genome. A novel gene order in higher vertebrates

9 November 2024

81

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Sequence evolution in and around the mitochondrial control region in birds

9 November 2024

83

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Precise sequence assignment of replication origin in the control region of chick mitochondrial DNA relative to 5' and 3' D-loop ends, secondary structure, DNA synthesis, and protein binding

9 November 2024

84

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A new chick mitochondrial DNA-binding protein exhibits sequence-specific interaction near heavy-strand replication origin: Cleavage activity, stimulation of mtDNA synthesis, and enhancement in transformed fibroblasts

9 November 2024

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Structural conservation and variation in the D-loop-containing region of vertebrate mitochondrial DNA.

9 November 2024

86

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The main regulatory region of mammalian mitochondrial DNA: structure-function model and evolutionary pattern.

9 November 2024

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The POP1 gene encodes a protein component common to the RNase MRP and RNase P ribonucleoproteins

9 November 2024

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The 40-kilodalton to autoantigen associates with nucleotides 21 to 64 of human mitochondrial RNA processing/7-2 RNA in vitro

9 November 2024

89

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Mismatch-specific 3'----5' exonuclease associated with the mitochondrial DNA polymerase from Drosophila embryos

9 November 2024

93

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Coprecipitation of 3'----5' exonuclease and DNA polymerase gamma with anti-DNA polymerase gamma antibody.

9 November 2024

96

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Mitochondrial DNA polymerase from Drosophila melanogaster embryos: kinetics, processivity, and fidelity of DNA polymerization.

9 November 2024

98

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Subunit structure of mitochondrial DNA polymerase from Drosophila embryos. Physical and immunological studies

9 November 2024

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MIP1 DNA polymerase of S. cerevisiae: structural similarity with the E. coli DNA polymerase I-type enzymes

9 November 2024

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Yeast mitochondrial DNA polymerase is related to the family A DNA polymerases

9 November 2024

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Yeast mitochondrial DNA mutators with deficient proofreading exonucleolytic activity

9 November 2024

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Isolation and characterization of ten mutator alleles of the mitochondrial DNA polymerase-encoding MIP1 gene from Saccharomyces cerevisiae.

9 November 2024

105

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The gamma subfamily of DNA polymerases: cloning of a developmentally regulated cDNA encoding Xenopus laevis mitochondrial DNA polymerase gamma.

9 November 2024

106

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Catalytic subunit of mitochondrial DNA polymerase from Drosophila embryos. Cloning, bacterial overexpression, and biochemical characterization

9 November 2024

107

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Primary structure of the two variants of Xenopus laevis mtSSB, a mitochondrial DNA binding protein

9 November 2024

108

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Structural and functional studies of the rat mitochondrial single strand DNA binding protein P16.

9 November 2024

109

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Characterization of a mitochondrial protein binding to single-stranded DNA

9 November 2024

110

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Purification and general properties of the DNA-binding protein (P16) from rat liver mitochondria

9 November 2024

111

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A full-length cDNA encoding a mitochondrial DNA-specific single-stranded DNA binding protein from Xenopus laevis

9 November 2024

112

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Cloning of human and rat cDNAs encoding the mitochondrial single-stranded DNA-binding protein (SSB)

9 November 2024

113

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A single-stranded DNA binding protein required for mitochondrial DNA replication in S. cerevisiae is homologous to E. coli SSB

9 November 2024

114

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Effects of the Xenopus laevis mitochondrial single-stranded DNA-binding protein on the activity of DNA polymerase gamma

9 November 2024

116

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https://api.crossref.org/works/10.1146/ANNUREV.BIOCHEM.66.1.409

Stimulation of Drosophila mitochondrial DNA polymerase by single-stranded DNA-binding protein

9 November 2024

117

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https://api.crossref.org/works/10.1146/ANNUREV.BIOCHEM.66.1.409

DNA helicase from mammalian mitochondria

9 November 2024

118

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https://api.crossref.org/works/10.1146/ANNUREV.BIOCHEM.66.1.409

DNA-helicase activity from sea urchin mitochondria.

9 November 2024

120

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https://api.crossref.org/works/10.1146/ANNUREV.BIOCHEM.66.1.409

Mitochondrial DNA structure and expression in specialized subtypes of mammalian striated muscle

9 November 2024

122

1 reference

https://api.crossref.org/works/10.1146/ANNUREV.BIOCHEM.66.1.409

Changes in D-loop frequency and superhelicity among the mitochondrial DNA molecules in relation to organelle biogenesis in oocytes of Xenopus laevis.

9 November 2024

123

1 reference

https://api.crossref.org/works/10.1146/ANNUREV.BIOCHEM.66.1.409

Elongation of displacement-loop strands in human and mouse mitochondrial DNA is arrested near specific template sequences

9 November 2024

124

1 reference

https://api.crossref.org/works/10.1146/ANNUREV.BIOCHEM.66.1.409

Comparisons of ape and human sequences that regulate mitochondrial DNA transcription and D-loop DNA synthesis

9 November 2024

126

1 reference

https://api.crossref.org/works/10.1146/ANNUREV.BIOCHEM.66.1.409

Template-directed arrest of mammalian mitochondrial DNA synthesis

9 November 2024

127

1 reference

https://api.crossref.org/works/10.1146/ANNUREV.BIOCHEM.66.1.409

Protein binding to a single termination-associated sequence in the mitochondrial DNA D-loop region

9 November 2024

128

1 reference

https://api.crossref.org/works/10.1146/ANNUREV.BIOCHEM.66.1.409

Mechanism of mitochondrial DNA replication in mouse L-cells: Localization and sequence of the light-strand origin of replication

9 November 2024

129

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Molecular Biology and Evolution

9 November 2024

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The marsupial mitochondrial genome and the evolution of placental mammals

9 November 2024

134

1 reference

https://api.crossref.org/works/10.1146/ANNUREV.BIOCHEM.66.1.409

Rearrangements of mitochondrial transfer RNA genes in marsupials

9 November 2024

135

1 reference

https://api.crossref.org/works/10.1146/ANNUREV.BIOCHEM.66.1.409

Addition of a 29 residue carboxyl-terminal tail converts a simple HMG box-containing protein into a transcriptional activator.

9 November 2024

136

1 reference

https://api.crossref.org/works/10.1146/ANNUREV.BIOCHEM.66.1.409

Structural basis for DNA bending by the architectural transcription factor LEF-1

9 November 2024

138

1 reference

https://api.crossref.org/works/10.1146/ANNUREV.BIOCHEM.66.1.409

A single mouse gene encodes the mitochondrial transcription factor A and a testis-specific nuclear HMG-box protein

9 November 2024

139

1 reference

https://api.crossref.org/works/10.1146/ANNUREV.BIOCHEM.66.1.409

Mitochondrial DNA polymerase gamma is expressed and translated in the absence of mitochondrial DNA maintenance and replication

9 November 2024

140

1 reference

https://api.crossref.org/works/10.1146/ANNUREV.BIOCHEM.66.1.409

Low levels of mitochondrial transcription factor A in mitochondrial DNA depletion

9 November 2024

141

1 reference

https://api.crossref.org/works/10.1146/ANNUREV.BIOCHEM.66.1.409

Deficiency of the human mitochondrial transcription factor h-mtTFA in infantile mitochondrial myopathy is associated with mtDNA depletion.

9 November 2024

142

1 reference

https://api.crossref.org/works/10.1146/ANNUREV.BIOCHEM.66.1.409

Stoichiometry of mitochondrial transcripts and regulation of gene expression by mitochondrial transcription factor A.

9 November 2024

143

1 reference

https://api.crossref.org/works/10.1146/ANNUREV.BIOCHEM.66.1.409

Mitochondrial gene expression in small intestinal epithelial cells

9 November 2024

144

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Mouse L cell mitochondrial DNA molecules are selected randomly for replication throughout the cell cycle

9 November 2024

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5-Bromodeoxyuridine labeling of monomeric and catenated circular mitochondrial DNA in hela cells

9 November 2024

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In situ localization of mitochondrial DNA replication in intact mammalian cells

9 November 2024

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In organello footprint analysis of human mitochondrial DNA: human mitochondrial transcription factor A interactions at the origin of replication

9 November 2024

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9 November 2024

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A human mitochondrial transcriptional activator can functionally replace a yeast mitochondrial HMG-box protein both in vivo and in vitro

9 November 2024

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Rapid evolution of animal mitochondrial DNA

9 November 2024

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Molecular genetic aspects of human mitochondrial disorders

9 November 2024

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Normal oxidative damage to mitochondrial and nuclear DNA is extensive

9 November 2024

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Covalent binding of polycyclic aromatic compounds to mitochondrial and nuclear DNA.

9 November 2024

159

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Mitochondrial DNA is a major cellular target for a dihydrodiol-epoxide derivative of benzo[a]pyrene.

9 November 2024

160

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Preferential attack of mitochondrial DNA by aflatoxin B1 during hepatocarcinogenesis

9 November 2024

161

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Mitochondrial DNA damage by anticancer agents

9 November 2024

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Massive conversion of guanosine to 8-hydroxy-guanosine in mouse liver mitochondrial DNA by administration of azidothymidine

9 November 2024

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Mitochondrial toxicity of antiviral drugs

9 November 2024

164

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Action of mitochondrial DNA polymerase gamma at sites of base loss or oxidative damage

9 November 2024

165

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Oxidative damage and mitochondrial decay in aging

9 November 2024

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Quantification of oxidative DNA modifications in mitochondria.

9 November 2024

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Oxidation of Mitochondrial Proteins and DNA Following Administration of Ethanol

9 November 2024

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Oxidative damage to mitochondrial DNA shows marked age-dependent increases in human brain.

9 November 2024

170

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Oxidative damage to mitochondrial DNA is increased in Alzheimer's disease

9 November 2024

171

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Repair of mitochondrial DNA after various types of DNA damage in Chinese hamster ovary cells

9 November 2024

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Repair of alkylated purines in the hepatic DNA of mitochondria and nuclei in the rat

9 November 2024

174

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Repair of mitochondrial DNA damage induced by bleomycin in human cells

9 November 2024

176

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The absence of a pyrimidine dimer repair mechanism in mammalian mitochondria

9 November 2024

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9 November 2024

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Affinity purification and comparative analysis of two distinct human uracil-DNA glycosylases

9 November 2024

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Purification and properties of mitochondrial uracil-DNA glycosylase from rat liver

9 November 2024

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Mammalian mitochondrial endonuclease activities specific for ultraviolet-irradiated DNA.

9 November 2024

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Characterization of insertion mutations in the Saccharomyces cerevisiae MSH1 and MSH2 genes: evidence for separate mitochondrial and nuclear functions

9 November 2024

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Plasmids can stably transform yeast mitochondria lacking endogenous mtDNA.

9 November 2024

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Mitochondrial transformation in yeast by bombardment with microprojectiles

9 November 2024

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Retention of both parental mitochondrial DNA species in mouse-Chinese hamster somatic cell hybrids.

9 November 2024

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Absence of extensive recombination between inter- and intraspecies mitochondrial DNA in mammalian cells.

9 November 2024

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Injection of mitochondria into human cells leads to a rapid replacement of the endogenous mitochondrial DNA.

9 November 2024

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Human mitochondria and mitochondrial genome function as a single dynamic cellular unit

9 November 2024

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Assignment of two mitochondrially synthesized polypeptides to human mitochondrial DNA and their use in the study of intracellular mitochondrial interaction

9 November 2024

192

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Transcription and translation of mitochondrial DNA in interspecific somatic cell hybrids

9 November 2024

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Introduction of disease-related mitochondrial DNA deletions into HeLa cells lacking mitochondrial DNA results in mitochondrial dysfunction

9 November 2024

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Complementation of mutant and wild-type human mitochondrial DNAs coexisting since the mutation event and lack of complementation of DNAs introduced separately into a cell within distinct organelles

9 November 2024

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Human mitochondria: distinct organelles or dynamic network?

9 November 2024

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Deletions of muscle mitochondrial DNA in patients with mitochondrial myopathies

9 November 2024

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Mitochondrial DNA mutation associated with Leber's hereditary optic neuropathy

9 November 2024

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The development of mitochondrial medicine

9 November 2024

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Mitochondrial genetics: a paradigm for aging and degenerative diseases?

9 November 2024

200

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Distinct genomic copy number in mitochondria of different mammalian organs

9 November 2024

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RTG genes in yeast that function in communication between mitochondria and the nucleus are also required for expression of genes encoding peroxisomal proteins

9 November 2024

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NRF-1: a trans-activator of nuclear-encoded respiratory genes in animal cells

9 November 2024

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RTG1 and RTG2: two yeast genes required for a novel path of communication from mitochondria to the nucleus

9 November 2024

205

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Crosstalk between nuclear and mitochondrial genomes

9 November 2024

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Transactivation by Rtg1p, a basic helix-loop-helix protein that functions in communication between mitochondria and the nucleus in yeast

9 November 2024

207

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Human cell mutants with very low mitochondrial DNA copy number ( d)

9 November 2024

208

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Activation of the human mitochondrial transcription factor A gene by nuclear respiratory factors: a potential regulatory link between nuclear and mitochondrial gene expression in organelle biogenesis

9 November 2024

209

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Nuclear responses to depletion of mitochondrial DNA in human cells

9 November 2024

210

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A 43-kDa Protein Related to c-Erb A α1 Is Located in the Mitochondrial Matrix of Rat Liver

9 November 2024

211

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Cloning and characterization of the human mitochondrial DNA polymerase, DNA polymerase gamma

9 November 2024

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9 November 2024

Identifiers

1 reference

24 September 2017

1 reference