(Q40934836)

25 September 2017

De Novo assembly of the complete genome of an enhanced electricity-producing variant of Geobacter sulfurreducens using only short reads (English)

1 reference

25 September 2017

0 references

1 reference

Geobacter sulfurreducens

object named as

Geobacter sulfurreducens

1 reference

based on heuristic

inferred from title

whole genome sequencing

1 reference

5

1 reference

25 September 2017

Jessica E Butler

2

0 references

Derek R. Lovley

10

object named as

Derek R Lovley

1 reference

25 September 2017

9

Bernhard Ø Palsson

1 reference

25 September 2017

1

Harish Nagarajan

1 reference

25 September 2017

3

Anna Klimes

1 reference

25 September 2017

Yu Qiu

4

1 reference

25 September 2017

Joy Ward

6

1 reference

25 September 2017

Nelson D Young

7

1 reference

25 September 2017

Barbara A Methé

8

1 reference

25 September 2017

Christian L Barrett

11

1 reference

25 September 2017

language of work or name

English

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publication date

8 June 2010

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25 September 2017

1 reference

25 September 2017

5

1 reference

25 September 2017

6

1 reference

25 September 2017

e10922

1 reference

Creative Commons Attribution 4.0 International

25 September 2017

start time

8 June 2010

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

MUMmer

object named as

MUMMER

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

Transposases are the most abundant, most ubiquitous genes in nature.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882325

High quality draft sequences for prokaryotic genomes using a mix of new sequencing technologies

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882325

De novo assembly using low-coverage short read sequence data from the rice pathogen Pseudomonas syringae pv. oryzae

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882325

The microbe electric: conversion of organic matter to electricity

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882325

NCBI Reference Sequences: current status, policy and new initiatives

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882325

Gene-boosted assembly of a novel bacterial genome from very short reads

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882325

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882325

ALLPATHS: de novo assembly of whole-genome shotgun microreads

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882325

De novo bacterial genome sequencing: millions of very short reads assembled on a desktop computer

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882325

The RAST Server: rapid annotations using subsystems technology

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882325

Outer membrane c-type cytochromes required for Fe(III) and Mn(IV) oxide reduction in Geobacter sulfurreducens

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882325

Genome of Geobacter sulfurreducens: Metal Reduction in Subsurface Environments

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882325

Fast algorithms for large-scale genome alignment and comparison

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882325

A greedy algorithm for aligning DNA sequences

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882325

Comparative genomics of the eukaryotes

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882325

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882325

Improved tools for biological sequence comparison

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882325

Short read fragment assembly of bacterial genomes

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882325

From small reads do mighty genomes grow.

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882325

Selection of a variant of Geobacter sulfurreducens with enhanced capacity for current production in microbial fuel cells.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882325

De novo fragment assembly with short mate-paired reads: Does the read length matter?

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882325

Extending assembly of short DNA sequences to handle error.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882325

Characterization of metabolism in the Fe(III)-reducing organism Geobacter sulfurreducens by constraint-based modeling

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882325

10.1371/JOURNAL.PONE.0010922

19 August 2018

Identifiers

DOI

1 reference

25 September 2017

0 references

1 reference

25 September 2017

PubMed publication ID

20544019

1 reference