(Q40949573)

25 September 2017

SLAM: cross-species gene finding and alignment with a generalized pair hidden Markov model (English)

1 reference

25 September 2017

0 references

Marina Alexandersson

1

0 references

Lior Pachter

series ordinal

3

object named as

Lior Pachter

1 reference

25 September 2017

Simon Cawley

2

1 reference

PMC publication ID

430255

25 September 2017

language of work or name

1 reference

1 March 2003

1 reference

25 September 2017

1 reference

25 September 2017

13

1 reference

25 September 2017

3

1 reference

25 September 2017

496-502

1 reference

AVID: A global alignment program

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=430255

An apolipoprotein influencing triglycerides in humans and mice revealed by comparative sequencing

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=430255

Analysis of conserved noncoding DNA in Drosophila reveals similar constraints in intergenic and intronic sequences.

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=430255

Computational inference of homologous gene structures in the human genome

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=430255

An assessment of gene prediction accuracy in large DNA sequences

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=430255

Human and mouse gene structure: comparative analysis and application to exon prediction

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=430255

Using GeneWise in the Drosophila annotation experiment

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=430255

Genie--gene finding in Drosophila melanogaster

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=430255

Alignment of whole genomes

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=430255

Prediction of complete gene structures in human genomic DNA

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=430255

Comparative analysis of 1196 orthologous mouse and human full-length mRNA and protein sequences

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=430255

Gene recognition via spliced sequence alignment.

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=430255

A general method applicable to the search for similarities in the amino acid sequence of two proteins

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=430255

Basic local alignment search tool

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=430255

Integrating genomic homology into gene structure prediction.

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=430255

Conservation, regulation, synteny, and introns in a large-scale C. briggsae-C. elegans genomic alignment

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=430255

Evaluation of gene structure prediction programs.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=430255

The conserved exon method for gene finding

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=430255

Applications of Generalized Pair Hidden Markov Models to Alignment and Gene Finding Problems

4 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=430255

Long Human–Mouse Sequence Alignments Reveal Novel Regulatory Elements: A Reason to Sequence the Mouse Genome

2 December 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/12618381

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1101/GR.424203

1 reference

25 September 2017

1 reference

PMC publication ID

430255

25 September 2017

PubMed publication ID

12618381

1 reference

PMC publication ID

430255