(Q40950675)

English

Optimization of RNA 3D structure prediction using evolutionary restraints of nucleotide-nucleotide interactions from direct coupling analysis.

scientific article published on 8 May 2017

In more languages

Statements

scholarly article

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28482022%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

Optimization of RNA 3D structure prediction using evolutionary restraints of nucleotide-nucleotide interactions from direct coupling analysis (English)

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28482022%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

1 reference

based on heuristic

inferred from title

1

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28482022%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

author name string

Kangkun Mao

2

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28482022%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

Yunjie Zhao

3

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28482022%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

Chen Zeng

4

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28482022%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

Jianjin Xiang

5

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28482022%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

Yi Zhang

6

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28482022%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

Yi Xiao

7

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28482022%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

publication date

1 June 2017

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28482022%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

Nucleic Acids Research

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28482022%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

45

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28482022%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

11

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28482022%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

6299-6309

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28482022%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

copyright license

Creative Commons Attribution-NonCommercial 4.0 International

8 May 2017

1 reference

April 2022 Public Data File from Crossref

copyright status

0 references

The RCSB protein data bank: integrative view of protein, gene and 3D structural information

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5499770

25 September 2017

New functionality of RNAComposer: an application to shape the axis of miR160 precursor structure

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5499770

25 September 2017

SimRNAweb: a web server for RNA 3D structure modeling with optional restraints

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5499770

25 September 2017

3D RNA and Functional Interactions from Evolutionary Couplings

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5499770

25 September 2017

Physics-based RNA structure prediction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5499770

25 September 2017

Computational modeling of RNA 3D structures and interactions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5499770

25 September 2017

Direct-Coupling Analysis of nucleotide coevolution facilitates RNA secondary and tertiary structure prediction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5499770

25 September 2017

Forna (force-directed RNA): Simple and effective online RNA secondary structure diagrams

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5499770

25 September 2017

Predicting RNA 3D structure using a coarse-grain helix-centered model

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5499770

25 September 2017

RNA-Puzzles Round II: assessment of RNA structure prediction programs applied to three large RNA structures

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5499770

25 September 2017

3dRNAscore: a distance and torsion angle dependent evaluation function of 3D RNA structures

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5499770

25 September 2017

Rfam 12.0: updates to the RNA families database

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5499770

25 September 2017

Vfold: a web server for RNA structure and folding thermodynamics prediction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5499770

25 September 2017

Automated and fast building of three-dimensional RNA structures

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5499770

25 September 2017

Automated 3D structure composition for large RNAs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5499770

25 September 2017

Modeling nucleic acids

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5499770

25 September 2017

RNA-Puzzles: a CASP-like evaluation of RNA three-dimensional structure prediction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5499770

25 September 2017

Direct-coupling analysis of residue coevolution captures native contacts across many protein families

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5499770

25 September 2017

Computational approaches to RNA structure prediction, analysis, and design

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5499770

25 September 2017

ModeRNA: a tool for comparative modeling of RNA 3D structure

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5499770

25 September 2017

Assemble: an interactive graphical tool to analyze and build RNA architectures at the 2D and 3D levels

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5499770

25 September 2017

Modeling RNA loops using sequence homology and geometric constraints

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5499770

25 September 2017

Atomic accuracy in predicting and designing noncanonical RNA structure

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5499770

25 September 2017

Coarse-grained modeling of large RNA molecules with knowledge-based potentials and structural filters

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5499770

25 September 2017

iFoldRNA: three-dimensional RNA structure prediction and folding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5499770

25 September 2017

RNA2D3D: a program for generating, viewing, and comparing 3-dimensional models of RNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5499770

25 September 2017

The MC-Fold and MC-Sym pipeline infers RNA structure from sequence data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5499770

25 September 2017

Automated de novo prediction of native-like RNA tertiary structures

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5499770

25 September 2017

Evaluating and learning from RNA pseudotorsional space: quantitative validation of a reduced representation for RNA structure

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5499770

25 September 2017

Convergent solutions to binding at a protein-protein interface

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5499770

25 September 2017

MANIP: an interactive tool for modelling RNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5499770

25 September 2017

Physics-based de novo prediction of RNA 3D structures.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5499770

17 June 2018

A coarse-grained model with implicit salt for RNAs: predicting 3D structure, stability and salt effect.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5499770

19 August 2018

Direct coupling analysis for protein contact prediction.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5499770

19 August 2018

Native-like RNA tertiary structures using a sequence-encoded cleavage agent and refinement by discrete molecular dynamics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5499770

19 August 2018

A nucleotide-level coarse-grained model of RNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/28482022

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Improvements of the hierarchical approach for predicting RNA tertiary structure

1 reference

https://pubmed.ncbi.nlm.nih.gov/28482022

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

RNA fragment modeling with a nucleobase discrete-state model

1 reference

https://pubmed.ncbi.nlm.nih.gov/28482022

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1093/NAR/GKX386

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28482022%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28482022%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28482022%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

Sitelinks

Wikipedia(0 entries)

Wikibooks(0 entries)

Wikinews(0 entries)

Wikiquote(0 entries)

Wikisource(0 entries)

Wikiversity(0 entries)

Wikivoyage(0 entries)

Wiktionary(0 entries)

Multilingual sites(0 entries)

Retrieved from "https://www.wikidata.org/w/index.php?title=Q40950675&oldid=1846753132"