(Q41010938)

25 September 2017

STRIDE: a web server for secondary structure assignment from known atomic coordinates of proteins (English)

1 reference

25 September 2017

1 reference

Matthias Heinig

1

0 references

author name string

Dmitrij Frishman

series ordinal

2

1 reference

25 September 2017

1 July 2004

1 reference

25 September 2017

Nucleic Acids Research

1 reference

25 September 2017

32

1 reference

25 September 2017

W500-2

1 reference

25 September 2017

Web Server issue

1 reference

The distribution and query systems of the RCSB Protein Data Bank

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=441567

Secondary structure assignment.

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=441567

Structure validation by Calpha geometry: phi,psi and Cbeta deviation

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=441567

Continuum secondary structure captures protein flexibility

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=441567

PDBsum: a Web-based database of summaries and analyses of all PDB structures

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=441567

Knowledge-based protein secondary structure assignment

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=441567

VMD: visual molecular dynamics

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=441567

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=441567

Conformation of Polypeptides and Proteins

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=441567

Identification of structural motifs from protein coordinate data: secondary structure and first-level supersecondary structure

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=441567

Describing protein structure: a general algorithm yielding complete helicoidal parameters and a unique overall axis.

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=441567

New hydrogen-bond potentials for use in determining energetically favorable binding sites on molecules of known structure

26 September 2017

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15215436

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Further development of hydrogen bond functions for use in determining energetically favorable binding sites on molecules of known structure. 1. Ligand probe groups with the ability to form two hydrogen bonds

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15215436

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKH429

1 reference

25 September 2017

journals/nar/HeinigF04

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

25 September 2017

1 reference

PMCID

441567