(Q41077876)

26 September 2017

Cryo-EM structures of the ATP-bound Vps4E233Q hexamer and its complex with Vta1 at near-atomic resolution (English)

1 reference

cryogenic electron microscopy

26 September 2017

0 references

author name string

Shan Sun

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28714467%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Lin Li

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28714467%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Fan Yang

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28714467%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Xiaojing Wang

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28714467%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Mengyi Yang

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28714467%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Chunlai Chen

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28714467%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Xueming Li

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28714467%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Hong-Wei Wang

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28714467%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

language of work or name

English

0 references

publication date

17 July 2017

1 reference

26 September 2017

Nature Communications

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28714467%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

volume

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28714467%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

page(s)

16064

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28714467%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

5 June 2020

copyright license

start time

17 July 2017

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

ImageJ

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC5520056/fullTextXML

based on heuristic

inferred from PubMed Central ID database lookup

cites work

ESCRT-III and Vps4: a dynamic multipurpose tool for membrane budding and scission

1 reference

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Asymmetric ring structure of Vps4 required for ESCRT-III disassembly.

26 September 2017

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26 September 2017

ESCRTs are everywhere

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EMRinger: side chain-directed model and map validation for 3D cryo-electron microscopy.

26 September 2017

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Mechanistic insights into the recycling machine of the SNARE complex

26 September 2017

1 reference

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Vps4 stimulatory element of the cofactor Vta1 contacts the ATPase Vps4 α7 and α9 to stimulate ATP hydrolysis

26 September 2017

1 reference

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Structure of the Yeast Mitochondrial Large Ribosomal Subunit

26 September 2017

1 reference

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Nucleotide-induced asymmetry within ATPase activator ring drives 54-RNAP interaction and ATP hydrolysis

26 September 2017

1 reference

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The Oligomeric State of the Active Vps4 AAA ATPase

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5520056

Electron counting and beam-induced motion correction enable near-atomic-resolution single-particle cryo-EM.

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5520056

The endosomal sorting complex ESCRT-II mediates the assembly and architecture of ESCRT-III helices

26 September 2017

1 reference

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The hexameric helicase DnaB adopts a nonplanar conformation during translocation.

26 September 2017

1 reference

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RELION: implementation of a Bayesian approach to cryo-EM structure determination

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5520056

Prevention of overfitting in cryo-EM structure determination

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5520056

ATP-dependent conformational dynamics underlie the functional asymmetry of the replicative helicase from a minimalist eukaryote

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5520056

A Bayesian view on cryo-EM structure determination.

26 September 2017

1 reference

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Allosteric vs. spontaneous exit-site (E-site) tRNA dissociation early in protein synthesis

26 September 2017

1 reference

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Structure and function of the membrane deformation AAA ATPase Vps4.

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5520056

Structure and function of the AAA+ nucleotide binding pocket

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5520056

REFMAC5 for the refinement of macromolecular crystal structures

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5520056

The structural basis for MCM2-7 helicase activation by GINS and Cdc45.

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5520056

Coordination of substrate binding and ATP hydrolysis in Vps4-mediated ESCRT-III disassembly

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5520056

Structural Role of the Vps4-Vta1 Interface in ESCRT-III Recycling

26 September 2017

1 reference

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Features and development of Coot

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5520056

PHENIX: a comprehensive Python-based system for macromolecular structure solution

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5520056

MolProbity: all-atom structure validation for macromolecular crystallography

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5520056

Running in Reverse: The Structural Basis for Translocation Polarity in Hexameric Helicases

26 September 2017

1 reference

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Helical extension of the neuronal SNARE complex into the membrane

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5520056

Three-dimensional structure of AAA ATPase Vps4: advancing structural insights into the mechanisms of endosomal sorting and enveloped virus budding

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5520056

Biochemical and Structural Studies of Yeast Vps4 Oligomerization

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5520056

Nucleotide-dependent conformational changes and assembly of the AAA ATPase SKD1/VPS4B

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5520056

A practical guide to single-molecule FRET

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5520056

Vacuolar protein sorting: two different functional states of the AAA-ATPase Vps4p

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5520056

Structural Basis of Vta1 Function in the Multivesicular Body Sorting Pathway

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5520056

Structural Characterization of the ATPase Reaction Cycle of Endosomal AAA Protein Vps4

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5520056

Inference of macromolecular assemblies from crystalline state

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5520056

EMAN2: an extensible image processing suite for electron microscopy

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5520056

Vta1p and Vps46p regulate the membrane association and ATPase activity of Vps4p at the yeast multivesicular body

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5520056

Recycling of ESCRTs by the AAA-ATPase Vps4 is regulated by a conserved VSL region in Vta1

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5520056

Structural and mechanistic studies of VPS4 proteins

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5520056

UCSF Chimera--a visualization system for exploratory research and analysis

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5520056

Conserved arginine residues implicated in ATP hydrolysis, nucleotide-sensing, and inter-subunit interactions in AAA and AAA+ ATPases.

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5520056

Characterization of Vta1p, a class E Vps protein in Saccharomyces cerevisiae

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5520056

Vps20p and Vta1p interact with Vps4p and function in multivesicular body sorting and endosomal transport in Saccharomyces cerevisiae.

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5520056

Accurate determination of local defocus and specimen tilt in electron microscopy

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5520056

Escrt-III: an endosome-associated heterooligomeric protein complex required for mvb sorting

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5520056

Crystal structure of the endosomal SNARE complex reveals common structural principles of all SNAREs

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5520056

Crystal structure of a SNARE complex involved in synaptic exocytosis at 2.4 A resolution

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5520056

The Vps4p AAA ATPase regulates membrane association of a Vps protein complex required for normal endosome function

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5520056

Endosomal transport function in yeast requires a novel AAA-type ATPase, Vps4p

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5520056

In a class of its own--the RNA polymerase sigma factor sigma 54 (sigma N).

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5520056

Quantifying the local resolution of cryo-EM density maps

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5520056

Cryo-EM structure of dodecameric Vps4p and its 2:1 complex with Vta1p

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5520056

Tools for macromolecular model building and refinement into electron cryo-microscopy reconstructions

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5520056

A common feature from different subunits of a homomeric AAA+ protein contacts three spatially distinct transcription elements

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5520056

ESCRT-III polymers in membrane neck constriction.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5520056

ESCRT-III family members stimulate Vps4 ATPase activity directly or via Vta1.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5520056

19 August 2018

Identifiers

DOI

10.1038/NCOMMS16064

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28714467%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

5 June 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28714467%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

PubMed publication ID

28714467

1 reference