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Scores for sequence searches and alignments
scientific article published on June 1996
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instance of
scholarly article
1 reference
stated in
Europe PubMed Central
PubMed ID
8804821
retrieved
26 September 2017
review article
1 reference
stated in
Europe PubMed Central
title
Scores for sequence searches and alignments
(English)
1 reference
stated in
Europe PubMed Central
PubMed ID
8804821
retrieved
26 September 2017
main subject
sequence alignment
1 reference
based on heuristic
inferred from title
author name string
Henikoff S
series ordinal
1
1 reference
stated in
Europe PubMed Central
PubMed ID
8804821
retrieved
26 September 2017
publication date
1 June 1996
1 reference
stated in
Europe PubMed Central
PubMed ID
8804821
retrieved
26 September 2017
published in
Current Opinion in Structural Biology
1 reference
stated in
Europe PubMed Central
PubMed ID
8804821
retrieved
26 September 2017
volume
6
1 reference
stated in
Europe PubMed Central
PubMed ID
8804821
retrieved
26 September 2017
page(s)
353-360
1 reference
stated in
Europe PubMed Central
PubMed ID
8804821
retrieved
26 September 2017
issue
3
1 reference
stated in
Europe PubMed Central
PubMed ID
8804821
retrieved
26 September 2017
cites work
From genome sequences to protein function
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980055-8
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7 January 2021
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Phosphotransferase sequence homology
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reference URL
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7 January 2021
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PROSITE: a dictionary of sites and patterns in proteins
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reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980055-8
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7 January 2021
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Profile analysis: detection of distantly related proteins
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980055-8
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7 January 2021
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Amino acid substitution matrices from an information theoretic perspective
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980055-8
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7 January 2021
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Amino acid difference formula to help explain protein evolution
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980055-8
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7 January 2021
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Two types of amino acid substitutions in protein evolution
1 reference
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reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980055-8
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7 January 2021
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Aligning amino acid sequences: Comparison of commonly used methods
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980055-8
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7 January 2021
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New scoring matrix for amino acid residue exchanges based on residue characteristic physical parameters
1 reference
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reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980055-8
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7 January 2021
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A new substitution matrix for protein sequence searches based on contact frequencies in protein structures
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980055-8
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7 January 2021
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Performance evaluation of amino acid substitution matrices
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980055-8
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7 January 2021
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Amino acid substitution during functionally constrained divergent evolution of protein sequences.
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980055-8
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7 January 2021
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Exhaustive matching of the entire protein sequence database
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980055-8
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7 January 2021
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Amino acid substitution matrices from protein blocks
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980055-8
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7 January 2021
based on heuristic
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Automated assembly of protein blocks for database searching
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980055-8
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7 January 2021
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Amino acid substitutions in structurally related proteins. A pattern recognition approach. Determination of a new and efficient scoring matrix.
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980055-8
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7 January 2021
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Environment-specific amino acid substitution tables: tertiary templates and prediction of protein folds
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980055-8
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7 January 2021
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A Structural Basis for Sequence Comparisons
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reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980055-8
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Comparison of methods for searching protein sequence databases.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980055-8
retrieved
7 January 2021
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An assessment of amino acid exchange matrices in aligning protein sequences: the twilight zone revisited
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980055-8
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7 January 2021
based on heuristic
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Motif-biased protein sequence alignment.
1 reference
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reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980055-8
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7 January 2021
based on heuristic
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Maximum-likelihood estimation of the statistical distribution of Smith-Waterman local sequence similarity scores.
1 reference
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reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980055-8
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7 January 2021
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Sequence alignment and penalty choice. Review of concepts, case studies and implications
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980055-8
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7 January 2021
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A Method to Identify Protein Sequences That Fold into a Known Three-Dimensional Structure
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980055-8
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7 January 2021
based on heuristic
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Hidden Markov models in computational biology. Applications to protein modeling
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980055-8
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7 January 2021
based on heuristic
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Hidden Markov models of biological primary sequence information
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980055-8
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7 January 2021
based on heuristic
inferred from DOI database lookup
Maximum discrimination hidden Markov models of sequence consensus
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980055-8
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7 January 2021
based on heuristic
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Detection of conserved segments in proteins: iterative scanning of sequence databases with alignment blocks
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980055-8
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7 January 2021
based on heuristic
inferred from DOI database lookup
Improving the sensitivity of the sequence profile method
1 reference
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Crossref
reference URL
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7 January 2021
based on heuristic
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Systematic method for the detection of potential lambda Cro-like DNA-binding regions in proteins.
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980055-8
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7 January 2021
based on heuristic
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Detecting subtle sequence signals: a Gibbs sampling strategy for multiple alignment
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980055-8
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7 January 2021
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Some useful statistical properties of position-weight matrices
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980055-8
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7 January 2021
based on heuristic
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Position-based sequence weights
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980055-8
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7 January 2021
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Database of homology-derived protein structures and the structural meaning of sequence alignment
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980055-8
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7 January 2021
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The HSSP database of protein structure-sequence alignments
1 reference
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7 January 2021
based on heuristic
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The multiplicity of domains in proteins
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980055-8
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7 January 2021
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CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980055-8
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7 January 2021
based on heuristic
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An investigation of conservation-biased gap-penalties for multiple protein sequence alignment.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980055-8
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7 January 2021
based on heuristic
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A protein alignment scoring system sensitive at all evolutionary distances
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980055-8
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Assessment of protein models with three-dimensional profiles
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980055-8
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7 January 2021
based on heuristic
inferred from DOI database lookup
Statistics of sequence-structure threading
1 reference
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Crossref
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https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980055-8
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7 January 2021
based on heuristic
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A large-scale experiment to assess protein structure prediction methods.
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980055-8
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7 January 2021
based on heuristic
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Protein structure prediction by threading methods: evaluation of current techniques
1 reference
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Crossref
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https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980055-8
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7 January 2021
based on heuristic
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Fold recognition and ab initio structure predictions using hidden Markov models and beta-strand pair potentials
1 reference
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reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980055-8
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7 January 2021
based on heuristic
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A simple and fast approach to prediction of protein secondary structure from multiply aligned sequences with accuracy above 70%.
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980055-8
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7 January 2021
based on heuristic
inferred from DOI database lookup
Improved alignment of weakly homologous protein sequences using structural information.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980055-8
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7 January 2021
based on heuristic
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Recognition of related proteins by iterative template refinement (ITR)
1 reference
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https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980055-8
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7 January 2021
based on heuristic
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A sequence property approach to searching protein databases
1 reference
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Crossref
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https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980055-8
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7 January 2021
based on heuristic
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New alignment strategy for transmembrane proteins.
1 reference
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Crossref
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https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980055-8
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7 January 2021
based on heuristic
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A mutation data matrix for transmembrane proteins
1 reference
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7 January 2021
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Analysis of amino acid substitution during divergent evolution: the 400 by 400 dipeptide substitution matrix.
1 reference
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Crossref
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https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980055-8
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7 January 2021
based on heuristic
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Recurring local sequence motifs in proteins.
1 reference
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Crossref
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https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980055-8
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7 January 2021
based on heuristic
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Bacterial genome sequence bagged
1 reference
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7 January 2021
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A large family of bacterial activator proteins
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7 January 2021
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rbcR [correction of rcbR], a gene coding for a member of the LysR family of transcriptional regulators, is located upstream of the expressed set of ribulose 1,5-bisphosphate carboxylase/oxygenase genes in the photosynthetic bacterium Chromatium vino
1 reference
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https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980055-8
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7 January 2021
based on heuristic
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Basic local alignment search tool
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980055-8
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7 January 2021
based on heuristic
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Identifiers
DOI
10.1016/S0959-440X(96)80055-8
1 reference
stated in
Europe PubMed Central
PubMed ID
8804821
retrieved
26 September 2017
PubMed ID
8804821
1 reference
stated in
Europe PubMed Central
PubMed ID
8804821
retrieved
26 September 2017
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