(Q41132495)

English

Protein costs do not explain evolution of metabolic strategies and regulation of ribosomal content: does protein investment explain an anaerobic bacterial Crabtree effect?

scientific article published on 9 May 2015

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scholarly article

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Europe PubMed Central

PubMed publication ID

27 September 2017

Protein costs do not explain evolution of metabolic strategies and regulation of ribosomal content: does protein investment explain an anaerobic bacterial Crabtree effect? (English)

1 reference

Europe PubMed Central

PubMed publication ID

27 September 2017

protein evolution

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bacterial evolution

1 reference

based on heuristic

inferred from title

13

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Europe PubMed Central

PubMed publication ID

27 September 2017

Filipe Branco dos Santos

object named as

Filipe Branco Dos Santos

5

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object named as

Martin Giera

6

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object named as

Douwe Molenaar

11

0 references

8

object named as

Willem M de Vos

1 reference

Europe PubMed Central

PubMed publication ID

27 September 2017

author name string

Anisha Goel

1

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Europe PubMed Central

PubMed publication ID

27 September 2017

Thomas H Eckhardt

2

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Europe PubMed Central

PubMed publication ID

27 September 2017

Pranav Puri

3

1 reference

Europe PubMed Central

PubMed publication ID

27 September 2017

Anne de Jong

4

1 reference

Europe PubMed Central

PubMed publication ID

27 September 2017

Fabrizia Fusetti

7

1 reference

Europe PubMed Central

PubMed publication ID

27 September 2017

Jan Kok

9

1 reference

Europe PubMed Central

PubMed publication ID

27 September 2017

Bert Poolman

10

1 reference

Europe PubMed Central

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27 September 2017

Oscar P Kuipers

12

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Europe PubMed Central

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27 September 2017

language of work or name

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publication date

9 May 2015

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Europe PubMed Central

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27 September 2017

Molecular Microbiology

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Europe PubMed Central

PubMed publication ID

27 September 2017

97

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Europe PubMed Central

PubMed publication ID

27 September 2017

1

1 reference

Europe PubMed Central

PubMed publication ID

27 September 2017

77-92

1 reference

Europe PubMed Central

PubMed publication ID

27 September 2017

Intracellular crowding defines the mode and sequence of substrate uptake by Escherichia coli and constrains its metabolic activity.

1 reference

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FAME, the Flux Analysis and Modeling Environment

1 reference

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30S ribosomal subunits can be assembled in vivo without primary binding ribosomal protein S15.

1 reference

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Growth control of the eukaryote cell: a systems biology study in yeast

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Acetate kinase isozymes confer robustness in acetate metabolism

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Role of transcriptional regulation in controlling fluxes in central carbon metabolism of Saccharomyces cerevisiae. A chemostat culture study.

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Cellular metabolism and disease: what do metabolic outliers teach us?

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Optimality and evolutionary tuning of the expression level of a protein

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Gratuitous overexpression of genes in Escherichia coli leads to growth inhibition and ribosome destruction

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Growth rate regulated genes and their wide involvement in the Lactococcus lactis stress responses

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Arginine transport in Streptococcus lactis is catalyzed by a cationic exchanger

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Molecular physiology of sugar catabolism in Lactococcus lactis IL1403.

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Transcriptional, translational and metabolic regulation of glycolysis in Lactococcus lactis subsp. cremoris MG 1363 grown in continuous acidic cultures

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Control of the shift from homolactic acid to mixed-acid fermentation in Lactococcus lactis: predominant role of the NADH/NAD+ ratio

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Evolutionary dynamics of cancer prevention

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Regulation of ribosome production in Escherichia coli: Synthesis and stability of ribosomal RNA and of ribosomal protein messenger RNA at different growth rates

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Standardized assay medium to measure Lactococcus lactis enzyme activities while mimicking intracellular conditions

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Metabolic shifts: a fitness perspective for microbial cell factories

1 reference

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Proteomic analysis of Lactococcus lactis, a lactic acid bacterium

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Large-scale 13C-flux analysis reveals distinct transcriptional control of respiratory and fermentative metabolism in Escherichia coli

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A flux-sensing mechanism could regulate the switch between respiration and fermentation.

1 reference

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Metabolic flux analysis of Escherichia coli in glucose-limited continuous culture. I. Growth-rate-dependent metabolic efficiency at steady state

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21 January 2018

The roles of ribosomal proteins in the structure assembly, and evolution of the large ribosomal subunit

1 reference

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21 January 2018

Bacterial growth: global effects on gene expression, growth feedback and proteome partition

1 reference

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21 January 2018

Bacterial adaptation through distributed sensing of metabolic fluxes

1 reference

https://api.crossref.org/works/10.1111%2FMMI.13012

21 January 2018

Characterization of hibernating ribosomes in mammalian cells

1 reference

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21 January 2018

Transcriptome meets metabolome: hierarchical and metabolic regulation of the glycolytic pathway

1 reference

https://api.crossref.org/works/10.1111%2FMMI.13012

21 January 2018

Transcriptome analysis and related databases of Lactococcus lactis

1 reference

https://api.crossref.org/works/10.1111%2FMMI.13012

21 January 2018

Multi-omics approach to study the growth efficiency and amino acid metabolism in Lactococcus lactis at various specific growth rates

1 reference

https://api.crossref.org/works/10.1111%2FMMI.13012

21 January 2018

ArgR and AhrC are both required for regulation of arginine metabolism in Lactococcus lactis

1 reference

https://api.crossref.org/works/10.1111%2FMMI.13012

21 January 2018

GlnR-mediated regulation of nitrogen metabolism in Lactococcus lactis

1 reference

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21 January 2018

Transcriptome analysis of the Lactococcus lactis ArgR and AhrC regulons

1 reference

https://api.crossref.org/works/10.1111%2FMMI.13012

21 January 2018

Synthesis and posttranslational regulation of pyruvate formate-lyase in Lactococcus lactis

1 reference

https://api.crossref.org/works/10.1111%2FMMI.13012

21 January 2018

The level of pyruvate-formate lyase controls the shift from homolactic to mixed-acid product formation in Lactococcus lactis

1 reference

https://api.crossref.org/works/10.1111%2FMMI.13012

21 January 2018

Shifts in growth strategies reflect tradeoffs in cellular economics

1 reference

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21 January 2018

The assembly of prokaryotic ribosomes

1 reference

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21 January 2018

Unusual resistance of peptidyl transferase to protein extraction procedures

1 reference

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21 January 2018

Modeling Lactococcus lactis using a genome-scale flux model

1 reference

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21 January 2018

Examination of post-transcriptional regulations in prokaryotes by integrative biology.

1 reference

https://api.crossref.org/works/10.1111%2FMMI.13012

21 January 2018

How did Saccharomyces evolve to become a good brewer?

1 reference

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21 January 2018

Regulation of arginine-ornithine exchange and the arginine deiminase pathway in Streptococcus lactis

1 reference

https://api.crossref.org/works/10.1111%2FMMI.13012

21 January 2018

Systematic identification of tRNAome and its dynamics in Lactococcus lactis

1 reference

https://api.crossref.org/works/10.1111%2FMMI.13012

21 January 2018

Regulation of acetate kinase isozymes and its importance for mixed-acid fermentation in Lactococcus lactis

1 reference

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21 January 2018

The PEP-pyruvate-oxaloacetate node as the switch point for carbon flux distribution in bacteria

1 reference

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Bacterial growth laws and their applications

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Interdependence of cell growth and gene expression: origins and consequences.

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Cost of unneeded proteins in E. coli is reduced after several generations in exponential growth

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The Ser/Thr/Tyr phosphoproteome of Lactococcus lactis IL1403 reveals multiply phosphorylated proteins

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RNA, the first macromolecular catalyst: the ribosome is a ribozyme

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The cost of expression of Escherichia coli lac operon proteins is in the process, not in the products

1 reference

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Quantitation of protein

1 reference

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Expression of a small (p)ppGpp synthetase, YwaC, in the (p)ppGpp(0) mutant of Bacillus subtilis triggers YvyD-dependent dimerization of ribosome

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Acclimation of Saccharomyces cerevisiae to low temperature: a chemostat-based transcriptome analysis

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Quantifying E. coli Proteome and Transcriptome with Single-Molecule Sensitivity in Single Cells

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Analysis of growth of Lactobacillus plantarum WCFS1 on a complex medium using a genome-scale metabolic model.

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Ribosome binding proteins YhbH and YfiA have opposite functions during 100S formation in the stationary phase of Escherichia coli

1 reference

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Formation of 100S ribosomes in Staphylococcus aureus by the hibernation promoting factor homolog SaHPF.

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Systems biology approach reveals that overflow metabolism of acetate in Escherichia coli is triggered by carbon catabolite repression of acetyl-CoA synthetase

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Overflow metabolism in Escherichia coli during steady-state growth: transcriptional regulation and effect of the redox ratio

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1 reference

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Coordination of bacterial proteome with metabolism by cyclic AMP signalling.

1 reference

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Time-resolved determination of the CcpA regulon of Lactococcus lactis subsp. cremoris MG1363.

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Multi-way analysis of flux distributions across multiple conditions

1 reference

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21 January 2018

Identifiers

10.1111/MMI.13012

1 reference

Europe PubMed Central

PubMed publication ID

27 September 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

27 September 2017

ResearchGate publication ID

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