(Q41295041)

29 September 2017

Non-native interactions play an effective role in protein folding dynamics (English)

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29 September 2017

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Eugene I. Shakhnovich

series ordinal

4

object named as

Eugene I Shakhnovich

1 reference

29 September 2017

Patrícia F N Faísca

1

1 reference

29 September 2017

Ana Nunes

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2

1 reference

29 September 2017

Rui D M Travasso

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3

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29 September 2017

1 November 2010

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29 September 2017

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29 September 2017

19

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29 September 2017

11

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29 September 2017

2196-2209

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Competition between native topology and nonnative interactions in simple and complex folding kinetics of natural and designed proteins.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005790

Theoretical and experimental demonstration of the importance of specific nonnative interactions in protein folding

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005790

Protein folding studied by single-molecule FRET.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005790

The protein folding problem: when will it be solved?

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005790

Intermediates: ubiquitous species on folding energy landscapes?

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005790

Sequence of events in folding mechanism: beyond the Gō model

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005790

Single-molecule Forster resonance energy transfer study of protein dynamics under denaturing conditions

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005790

Reconstruction of the src-SH3 protein domain transition state ensemble using multiscale molecular dynamics simulations

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005790

The effects of nonnative interactions on protein folding rates: theory and simulation

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005790

Hidden intermediates and levinthal paradox in the folding of small proteins

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005790

Weak cooperativity in the core causes a switch in folding mechanism between two proteins of the cks family

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005790

Probing the free-energy surface for protein folding with single-molecule fluorescence spectroscopy

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005790

Topology, stability, sequence, and length: defining the determinants of two-state protein folding kinetics

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005790

Protein folding intermediates and pathways studied by hydrogen exchange

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005790

Kinetics, thermodynamics and evolution of non-native interactions in a protein folding nucleus

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005790

Probing the interaction between two single molecules: fluorescence resonance energy transfer between a single donor and a single acceptor.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005790

Engineering of stable and fast-folding sequences of model proteins

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005790

Evolution-like selection of fast-folding model proteins

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005790

Negative activation enthalpies in the kinetics of protein folding

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005790

Impact of local and non-local interactions on thermodynamics and kinetics of protein folding

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005790

Respective roles of short- and long-range interactions in protein folding

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005790

Identifying critical residues in protein folding: Insights from phi-value and P(fold) analysis

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005790

The limited role of nonnative contacts in the folding pathways of a lattice protein.

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005790

Problem solved* (*sort of).

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005790

Explicit-chain model of native-state hydrogen exchange: implications for event ordering and cooperativity in protein folding.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005790

How cytochrome c folds, and why: submolecular foldon units and their stepwise sequential stabilization.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005790

Commitment and nucleation in the protein G transition state

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005790

Kinetics of intramolecular contact formation in a denatured protein

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005790

Comparison between long-range interactions and contact order in determining the folding rate of two-state proteins: application of long-range order to folding rate prediction.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005790

Optimizing potentials for the inverse protein folding problem.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005790

How do small single-domain proteins fold?

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005790

Specific nucleus as the transition state for protein folding: evidence from the lattice model.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005790

Equation of State Calculations by Fast Computing Machines

19 August 2018

1 reference

On the relation between native geometry and conformational plasticity

21 January 2018

1 reference

Statistical analysis of native contact formation in the folding of designed model proteins

21 January 2018

1 reference

Hierarchy of events in the folding of model proteins

21 January 2018

1 reference

Pathways to folding, nucleation events, and native geometry

21 January 2018

1 reference

12 December 2020

Substructural cooperativity and parallel versus sequential events during protein unfolding

1 reference

12 December 2020

Folding pathway dependence on energetic frustration and interaction heterogeneity for a three-dimensional hydrophobic protein model

1 reference

12 December 2020

The nucleation mechanism of protein folding: a survey of computer simulation studies

1 reference

12 December 2020

Proteins with selected sequences fold into unique native conformation

1 reference

12 December 2020

Specificity of the initial collapse in the folding of the cold shock protein

1 reference

12 December 2020

Evidence for an unfolding and refolding pathway in cytochrome c

1 reference

12 December 2020

Native geometry and the dynamics of protein folding

1 reference

12 December 2020

Native topology or specific interactions: what is more important for protein folding?

1 reference

12 December 2020

Universality and diversity of the protein folding scenarios: a comprehensive analysis with the aid of a lattice model

1 reference

12 December 2020

Identifiers

DOI

10.1002/PRO.498

1 reference

29 September 2017

1 reference

29 September 2017

PubMed publication ID

20836137

1 reference