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An RNA conformational switch regulates pre-18S rRNA cleavage.
scientific article published on 8 October 2010
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3006654
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15 February 2020
title
An RNA conformational switch regulates pre-18S rRNA cleavage
(English)
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15 February 2020
author
Allison C Lamanna
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1
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3006654
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15 February 2020
Katrin Karbstein
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2
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15 February 2020
author name string
Allison C Lamanna
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1
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29 September 2017
language of work or name
English
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publication date
8 October 2010
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3006654
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15 February 2020
published in
Journal of Molecular Biology
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3006654
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15 February 2020
volume
405
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15 February 2020
page(s)
3-17
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15 February 2020
issue
1
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15 February 2020
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RNA helicase Prp43 and its co-factor Pfa1 promote 20 to 18 S rRNA processing catalyzed by the endonuclease Nob1.
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Nob1 binds the single-stranded cleavage site D at the 3'-end of 18S rRNA with its PIN domain
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Mrd1p binds to pre-rRNA early during transcription independent of U3 snoRNA and is required for compaction of the pre-rRNA into small subunit processomes
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Rrp5p, a trans-acting factor in yeast ribosome biogenesis, is an RNA-binding protein with a pronounced preference for U-rich sequences
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The splicing factor Prp43p, a DEAH box ATPase, functions in ribosome biogenesis
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The putative NTPase Fap7 mediates cytoplasmic 20S pre-rRNA processing through a direct interaction with Rps14.
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The splicing ATPase prp43p is a component of multiple preribosomal particles
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1 October 2017
Deletion of the three distal S1 motifs of Saccharomyces cerevisiae Rrp5p abolishes pre-rRNA processing at site A(2) without reducing the production of functional 40S subunits
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1 October 2017
Imp3p and Imp4p mediate formation of essential U3-precursor rRNA (pre-rRNA) duplexes, possibly to recruit the small subunit processome to the pre-rRNA.
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1 October 2017
PIN domain of Nob1p is required for D-site cleavage in 20S pre-rRNA
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The carboxy-terminal extension of yeast ribosomal protein S14 is necessary for maturation of 43S preribosomes.
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1 October 2017
Late cytoplasmic maturation of the small ribosomal subunit requires RIO proteins in Saccharomyces cerevisiae
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1 October 2017
Nob1p is required for cleavage of the 3' end of 18S rRNA
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PubMed Central
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1 October 2017
Bms1p, a novel GTP-binding protein, and the related Tsr1p are required for distinct steps of 40S ribosome biogenesis in yeast
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1 October 2017
Bms1p, a G-domain-containing protein, associates with Rcl1p and is required for 18S rRNA biogenesis in yeast.
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1 October 2017
Bypassing the rRNA processing endonucleolytic cleavage at site A2 in Saccharomyces cerevisiae.
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1 October 2017
Ribosome synthesis in Saccharomyces cerevisiae
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1 October 2017
Depletion of yeast RNase III blocks correct U2 3' end formation and results in polyadenylated but functional U2 snRNA.
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1 October 2017
Mechanical devices of the spliceosome: motors, clocks, springs, and things
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1 October 2017
Functional separation of pre-rRNA processing steps revealed by truncation of the U3 small nucleolar ribonucleoprotein component, Mpp10
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1 October 2017
Lithium toxicity in yeast is due to the inhibition of RNA processing enzymes
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1 October 2017
Synthesis of functional eukaryotic ribosomal RNAs in trans: development of a novel in vivo rDNA system for dissecting ribosome biogenesis
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1 October 2017
Dbp3p, a putative RNA helicase in Saccharomyces cerevisiae, is required for efficient pre-rRNA processing predominantly at site A3.
1 reference
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PubMed Central
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1 October 2017
Gene RRN4 in Saccharomyces cerevisiae encodes the A12.2 subunit of RNA polymerase I and is essential only at high temperatures
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1 October 2017
Alternate pathways for processing in the internal transcribed spacer 1 in pre-rRNA of Saccharomyces cerevisiae
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1 October 2017
The 5' end of yeast 5.8S rRNA is generated by exonucleases from an upstream cleavage site
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1 October 2017
Assembly mapping of 30 S ribosomal proteins from Escherichia coli. Further studies.
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1 October 2017
Secondary Methylation of Yeast Ribosomal Precursor RNA
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1 October 2017
Cracking pre-40S ribosomal subunit structure by systematic analyses of RNA-protein cross-linking
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11 June 2018
The roles of Rrp5p in the synthesis of yeast 18S and 5.8S rRNA can be functionally and physically separated
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11 June 2018
A phylogenetic analysis of Saccharomyces species by the sequence of 18S-28S rRNA spacer regions.
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11 June 2018
Incorporation of six additional proteins to complete the assembly map of the 50 S subunit from Escherichia coli ribosomes.
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11 June 2018
Immature small ribosomal subunits can engage in translation initiation in Saccharomyces cerevisiae
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19 August 2018
The adenosine dimethyltransferase KsgA recognizes a specific conformational state of the 30S ribosomal subunit
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19 August 2018
Identification of cis-acting elements involved in 3'-end formation of Saccharomyces cerevisiae 18S rRNA.
1 reference
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19 August 2018
Analysis of the In Vivo Assembly Pathway of Eukaryotic 40S Ribosomal Proteins
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retrieved
30 September 2018
Identifiers
DOI
10.1016/J.JMB.2010.09.064
1 reference
stated in
Europe PubMed Central
PMCID
3006654
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20934433%20AND%20SRC:MED&resulttype=core&format=json
retrieved
15 February 2020
PMCID
3006654
1 reference
stated in
Europe PubMed Central
PMCID
3006654
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20934433%20AND%20SRC:MED&resulttype=core&format=json
retrieved
15 February 2020
PubMed ID
20934433
1 reference
stated in
Europe PubMed Central
PMCID
3006654
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20934433%20AND%20SRC:MED&resulttype=core&format=json
retrieved
15 February 2020
ResearchGate publication ID
47383632
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