(Q41353622)

29 September 2017

Detecting N6-methyladenosine sites from RNA transcriptomes using ensemble Support Vector Machines (English)

1 reference

29 September 2017

support vector machine

1 reference

Wei Chen

1

1 reference

29 September 2017

Pengwei Xing

series ordinal

2

1 reference

29 September 2017

Quan Zou

series ordinal

3

1 reference

29 September 2017

language of work or name

English

0 references

publication date

12 January 2017

1 reference

29 September 2017

1 reference

29 September 2017

7

1 reference

29 September 2017

40242

1 reference

Creative Commons Attribution 4.0 International

29 September 2017

start time

12 January 2017

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

exact match

https://scigraph.springernature.com/pub.10.1038/srep40242

0 references

cites work

Improving tRNAscan-SE Annotation Results via Ensemble Classifiers

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5227715

Improving N(6)-methyladenosine site prediction with heuristic selection of nucleotide physical-chemical properties

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5227715

gkmSVM: an R package for gapped-kmer SVM

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5227715

SRAMP: prediction of mammalian N6-methyladenosine (m6A) sites based on sequence-derived features

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5227715

Improved and Promising Identification of Human MicroRNAs by Incorporating a High-Quality Negative Set.

1 October 2017

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5227715

1 October 2017

https://pubmed.ncbi.nlm.nih.gov/28079126

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identification and analysis of the N(6)-methyladenosine in the Saccharomyces cerevisiae transcriptome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5227715

Single-nucleotide-resolution mapping of m6A and m6Am throughout the transcriptome

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5227715

Pseudo nucleotide composition or PseKNC: an effective formulation for analyzing genomic sequences

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5227715

Unique features of the m6A methylome in Arabidopsis thaliana.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5227715

PseKNC-General: a cross-platform package for generating various modes of pseudo nucleotide compositions

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5227715

DMINDA: an integrated web server for DNA motif identification and analyses

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5227715

The dynamic epitranscriptome: N6-methyladenosine and gene expression control

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5227715

Methylation modifications in eukaryotic messenger RNA.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5227715

High-resolution mapping reveals a conserved, widespread, dynamic mRNA methylation program in yeast meiosis

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5227715

An approach for identifying cytokines based on a novel ensemble classifier.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5227715

Hierarchical classification of protein folds using a novel ensemble classifier

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5227715

Comprehensive analysis of mRNA methylation reveals enrichment in 3' UTRs and near stop codons

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5227715

Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5227715

The RNA Modification Database, RNAMDB: 2011 update

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5227715

MEME SUITE: tools for motif discovery and searching

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5227715

Identification of transcription factor and microRNA binding sites in responsible to fetal alcohol syndrome

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5227715

Classification of real and pseudo microRNA precursors using local structure-sequence features and support vector machine.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5227715

Data mining in bioinformatics using Weka

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5227715

Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson-Crick base pairs

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5227715

Improved free-energy parameters for predictions of RNA duplex stability

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5227715

Genomic analysis of silkworm microRNA promoters and clusters.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5227715

iRNA-Methyl: Identifying N(6)-methyladenosine sites using pseudo nucleotide composition.

11 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5227715

PseKNC: a flexible web server for generating pseudo K-tuple nucleotide composition.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5227715

A novel method for prokaryotic promoter prediction based on DNA stability

19 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FSREP40242

Genome-wide analysis of the interaction between the endosymbiotic bacterium Wolbachia and its Drosophila host

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FSREP40242

MethyRNA: a web server for identification of N6-methyladenosine sites

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28079126

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Molecular biology. Internal mRNA methylation finally finds functions

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28079126

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/SREP40242

1 reference

29 September 2017

1 reference

29 September 2017

PubMed publication ID

28079126

1 reference