(Q41381019)

30 September 2017

A generalized knowledge-based discriminatory function for biomolecular interactions (English)

1 reference

30 September 2017

Brady Bernard

1

1 reference

30 September 2017

Ram Samudrala

series ordinal

2

1 reference

30 September 2017

language of work or name

English

0 references

publication date

1 July 2009

1 reference

30 September 2017

1 reference

30 September 2017

76

1 reference

30 September 2017

1

1 reference

30 September 2017

115-128

1 reference

Protein meta-functional signatures from combining sequence, structure, evolution, and amino acid property information

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2891153

An all-atom, distance-dependent scoring function for the prediction of protein-DNA interactions from structure

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2891153

DrugScore(CSD)-knowledge-based scoring function derived from small molecule crystal data with superior recognition rate of near-native ligand poses and better affinity prediction

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2891153

A knowledge-based energy function for protein-ligand, protein-protein, and protein-DNA complexes

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2891153

Developments in the CCP4 molecular-graphics project

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2891153

Docking and scoring in virtual screening for drug discovery: methods and applications

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2891153

UCSF Chimera--a visualization system for exploratory research and analysis

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2891153

The Cambridge Structural Database: a quarter of a million crystal structures and rising

1 October 2017

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2891153

1 October 2017

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2891153

19 August 2018

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2891153

An all-atom distance-dependent conditional probability discriminatory function for protein structure prediction

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2891153

Modelling protein docking using shape complementarity, electrostatics and biochemical information

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2891153

Boltzmann's principle, knowledge-based mean fields and protein folding. An approach to the computational determination of protein structures

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2891153

Integrating statistical pair potentials into protein complex prediction.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2891153

Calculation of conformational ensembles from potentials of mean force. An approach to the knowledge-based prediction of local structures in globular proteins.

11 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2891153

PIPER: an FFT-based protein docking program with pairwise potentials.

11 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2891153

Q-SiteFinder: an energy-based method for the prediction of protein-ligand binding sites

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2891153

Comparative evaluation of 11 scoring functions for molecular docking

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2891153

New software for searching the Cambridge Structural Database and visualizing crystal structures

19 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19127590

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

An iterative knowledge-based scoring function to predict protein-ligand interactions: II. Validation of the scoring function

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19127590

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

An iterative knowledge-based scoring function for protein-protein recognition

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19127590

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1002/PROT.22323

1 reference

30 September 2017

1 reference

30 September 2017

PubMed publication ID

19127590

1 reference