(Q41431283)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23002139%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

title

Along signal paths: an empirical gene set approach exploiting pathway topology (English)

1 reference

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8 March 2020

1

1 reference

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8 March 2020

Chiara Romualdi

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23002139%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

author name string

Gabriele Sales

2

1 reference

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8 March 2020

M Sofia Massa

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23002139%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

Monica Chiogna

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23002139%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

publication date

21 September 2012

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23002139%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

published in

Nucleic Acids Research

1 reference

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8 March 2020

volume

41

1 reference

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8 March 2020

issue

1

1 reference

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8 March 2020

page(s)

e19

1 reference

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Creative Commons Attribution 3.0 Unported

8 March 2020

copyright license

start time

5 October 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Network-enabled gene expression analysis

1 reference

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graphite - a Bioconductor package to convert pathway topology to gene network.

1 October 2017

1 reference

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Pathway analysis of high-throughput biological data within a Bayesian network framework.

1 October 2017

1 reference

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A new pathway encompassing calpain 3 and its newly identified substrate cardiac ankyrin repeat protein is involved in the regulation of the nuclear factor-κB pathway in skeletal muscle

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3592432

Gene set analysis exploiting the topology of a pathway.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3592432

A general modular framework for gene set enrichment analysis

1 October 2017

1 reference

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A novel signaling pathway impact analysis.

1 October 2017

1 reference

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Reactome knowledgebase of human biological pathways and processes

1 October 2017

1 reference

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PID: the Pathway Interaction Database

1 October 2017

1 reference

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Calpain 3 is a modulator of the dysferlin protein complex in skeletal muscle

1 October 2017

1 reference

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Sparse inverse covariance estimation with the graphical lasso

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3592432

The chronic fatigue syndrome: a comparative pathway analysis.

1 October 2017

1 reference

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A systems biology approach for pathway level analysis

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3592432

Analyzing gene expression data in terms of gene sets: methodological issues

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3592432

Linear models and empirical bayes methods for assessing differential expression in microarray experiments

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3592432

Nuclear envelope dystrophies show a transcriptional fingerprint suggesting disruption of Rb-MyoD pathways in muscle regeneration

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3592432

Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3592432

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3592432

Discovering statistically significant pathways in expression profiling studies

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3592432

C-Abl as a modulator of p53.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3592432

Mechanisms of BCR-ABL in the pathogenesis of chronic myelogenous leukaemia

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3592432

Defective membrane repair in dysferlin-deficient muscular dystrophy

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3592432

Significance analysis of microarrays applied to the ionizing radiation response

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3592432

Gene ontology: tool for the unification of biology

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3592432

KEGG: Kyoto Encyclopedia of Genes and Genomes

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3592432

Mutations in the proteolytic enzyme calpain 3 cause limb-girdle muscular dystrophy type 2A

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3592432

Accurate ranking of differentially expressed genes by a distribution-free shrinkage approach.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3592432

A shrinkage approach to large-scale covariance matrix estimation and implications for functional genomics.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3592432

Calpain 3 participates in sarcomere remodeling by acting upstream of the ubiquitin-proteasome pathway.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3592432

Gene expression profiles of B-lineage adult acute lymphocytic leukemia reveal genetic patterns that identify lineage derivation and distinct mechanisms of transformation

19 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23002139

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

MicroRNA expression profiling in patients with lamin A/C-associated muscular dystrophy

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23002139

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKS866

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23002139%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23002139%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

PubMed publication ID

23002139

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23002139%20AND%20SRC:MED&resulttype=core&format=json