(Q41440455)

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Comparative Genomics of Burkholderia singularis sp. nov., a Low G+C Content, Free-Living Bacterium That Defies Taxonomic Dissection of the Genus Burkholderia

scientific article published on 6 September 2017

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Europe PubMed Central

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30 September 2017

Comparative Genomics of Burkholderia singularis sp. nov., a Low G+C Content, Free-Living Bacterium That Defies Taxonomic Dissection of the Genus Burkholderia (English)

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30 September 2017

comparative genomics

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based on heuristic

inferred from title

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based on heuristic

inferred from title

Burkholderia singularis

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Burkholderia singularis

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based on heuristic

inferred from title

1

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14 June 2020

Charlotte Peeters

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14 June 2020

Derek S Sarovich

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14 June 2020

Anthony L Baker

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14 June 2020

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Birgit De Smet

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14 June 2020

Deborah A Henry

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14 June 2020

Trevor J Hird

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14 June 2020

Mark Mayo

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Jeffrey Warner

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14 June 2020

Aurélien Carlier

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Bart J Currie

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14 June 2020

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Frontiers in Microbiology

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14 June 2020

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14 June 2020

Genome Data Provides High Support for Generic Boundaries in Burkholderia Sensu Lato

1 reference

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1 reference

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Improved multilocus sequence typing of Burkholderia pseudomallei and closely related species

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Transfer of eleven species of the genus Burkholderia to the genus Paraburkholderia and proposal of Caballeronia gen. nov. to accommodate twelve species of the genera Burkholderia and Paraburkholderia

1 reference

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Intracellular replication of the well-armed pathogen Burkholderia pseudomallei

1 reference

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The Rate and Molecular Spectrum of Spontaneous Mutations in the GC-Rich Multichromosome Genome of Burkholderia cenocepacia

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Emerging bacterial pathogens and changing concepts of bacterial pathogenesis in cystic fibrosis

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GC-Content evolution in bacterial genomes: the biased gene conversion hypothesis expands

1 reference

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Molecular signatures and phylogenomic analysis of the genus Burkholderia: proposal for division of this genus into the emended genus Burkholderia containing pathogenic organisms and a new genus Paraburkholderia gen. nov. harboring environmental spec

1 reference

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Concatenated alignments and the case of the disappearing tree

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Expanded microbial genome coverage and improved protein family annotation in the COG database

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Trimmomatic: a flexible trimmer for Illumina sequence data

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Time to revisit polyphasic taxonomy.

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1 October 2017

Metagenomic species profiling using universal phylogenetic marker genes

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1 October 2017

Burkholderia pseudomultivorans sp. nov., a novel Burkholderia cepacia complex species from human respiratory samples and the rhizosphere.

1 reference

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QUAST: quality assessment tool for genome assemblies

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Phylogenetic analysis of burkholderia species by multilocus sequence analysis

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Development and validation of Burkholderia pseudomallei-specific real-time PCR assays for clinical, environmental or forensic detection applications

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Phylogenomics of prokaryotic ribosomal proteins

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SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing

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1 October 2017

Burkholderia cepacia: This Decision Is Overdue

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1 October 2017

Ribosomal multilocus sequence typing: universal characterization of bacteria from domain to strain.

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1 October 2017

Common features of environmental and potentially beneficial plant-associated Burkholderia.

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Legume-nodulating betaproteobacteria: diversity, host range, and future prospects.

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The cluster 1 type VI secretion system is a major virulence determinant in Burkholderia pseudomallei

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1 October 2017

Macrophage and Galleria mellonella infection models reflect the virulence of naturally occurring isolates of B. pseudomallei, B. thailandensis and B. oklahomensis

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BIGSdb: Scalable analysis of bacterial genome variation at the population level.

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Complete genome sequence of Burkholderia rhizoxinica, an Endosymbiont of Rhizopus microsporus.

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Evidence that mutation is universally biased towards AT in bacteria

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The changing microbial epidemiology in cystic fibrosis

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FastTree 2--approximately maximum-likelihood trees for large alignments

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Notes on the characterization of prokaryote strains for taxonomic purposes

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trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

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Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database

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1 October 2017

The tree of one percent.

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1 October 2017

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1 October 2017

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1 October 2017

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1 October 2017

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1 October 2017

STRING: known and predicted protein-protein associations, integrated and transferred across organisms

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1 October 2017

MUSCLE: multiple sequence alignment with high accuracy and high throughput

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1 October 2017

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1 October 2017

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1 October 2017

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1 October 2017

DNA-Based diagnostic approaches for identification of Burkholderia cepacia complex, Burkholderia vietnamiensis, Burkholderia multivorans, Burkholderia stabilis, and Burkholderia cepacia genomovars I and III.

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1 October 2017

T-Coffee: A novel method for fast and accurate multiple sequence alignment

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1 October 2017

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1 October 2017

Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models

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1 October 2017

Flexible sequence similarity searching with the FASTA3 program package

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1 October 2017

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1 October 2017

Purification and characterization of 3-methyladenine DNA glycosylase I from Escherichia coli

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1 October 2017

Basic local alignment search tool

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1 October 2017

Polyphasic taxonomic study of the emended genus Arcobacter with Arcobacter butzleri comb. nov. and Arcobacter skirrowii sp. nov., an aerotolerant bacterium isolated from veterinary specimens

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5592201

1 October 2017

Proposal of Burkholderia gen. nov. and Transfer of Seven Species of the Genus Pseudomonas Homology Group II to the New Genus, with the Type Species Burkholderia cepacia (Palleroni and Holmes 1981) comb. nov

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5592201

1 October 2017

Evidence of horizontal gene transfer between obligate leaf nodule symbionts

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5592201

11 June 2018

The exopolysaccharide gene cluster Bcam1330-Bcam1341 is involved in Burkholderia cenocepacia biofilm formation, and its expression is regulated by c-di-GMP and Bcam1349.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5592201

11 June 2018

SINA: accurate high-throughput multiple sequence alignment of ribosomal RNA genes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5592201

11 June 2018

A LysR-type transcriptional regulator in Burkholderia cenocepacia influences colony morphology and virulence

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5592201

11 June 2018

Pseudogenes, junk DNA, and the dynamics of Rickettsia genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5592201

11 June 2018

The genome analysis of Candidatus Burkholderia crenata reveals that secondary metabolism may be a key function of the Ardisia crenata leaf nodule symbiosis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5592201

19 August 2018

DNA polymerase X from Deinococcus radiodurans implicated in bacterial tolerance to DNA damage is characterized as a short patch base excision repair polymerase.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5592201

19 August 2018

The temporal dynamics of slightly deleterious mutations in Escherichia coli and Shigella spp.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5592201

19 August 2018

Editing of misaligned 3'-termini by an intrinsic 3'-5' exonuclease activity residing in the PHP domain of a family X DNA polymerase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5592201

19 August 2018

Environmental Burkholderia cepacia complex isolates in human infections

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5592201

19 August 2018

Acceptance criteria for identification results of Gram-negative rods by mass spectrometry

1 reference

https://pubmed.ncbi.nlm.nih.gov/28932212

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The eroded genome of a Psychotria leaf symbiont: hypotheses about lifestyle and interactions with its plant host

1 reference

https://pubmed.ncbi.nlm.nih.gov/28932212

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Compositional correlation between deoxyribonucleic acid and protein

1 reference

https://pubmed.ncbi.nlm.nih.gov/28932212

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.3389/FMICB.2017.01679

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28932212%20AND%20SRC:MED&resulttype=core&format=json

14 June 2020

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28932212%20AND%20SRC:MED&resulttype=core&format=json

14 June 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28932212%20AND%20SRC:MED&resulttype=core&format=json

14 June 2020

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