(Q41481730)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25650239%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

title

Characterization of monobody scaffold interactions with ligand via force spectroscopy and steered molecular dynamics (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25650239%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25650239%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

author name string

Luthur Siu-Lun Cheung

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25650239%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

Daniel J Shea

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25650239%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

Nathan Nicholes

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25650239%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

Amol Date

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25650239%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

Konstantinos Konstantopoulos

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25650239%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

language of work or name

English

0 references

publication date

4 February 2015

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25650239%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25650239%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

volume

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25650239%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

page(s)

8247

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25650239%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International

29 February 2020

copyright license

start time

4 February 2015

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Computations of Absolute Solvation Free Energies of Small Molecules Using Explicit and Implicit Solvent Model

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All-atom empirical potential for molecular modeling and dynamics studies of proteins

11 June 2018

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Accumulation of dynamic catch bonds between TCR and agonist peptide-MHC triggers T cell signaling.

11 June 2018

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Architecture and assembly of the Gram-positive cell wall

11 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316159

Human IL-34 and CSF-1 establish structurally similar extracellular assemblies with their common hematopoietic receptor

11 June 2018

1 reference

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PDGF suppresses the sulfation of CD44v and potentiates CD44v-mediated binding of colon carcinoma cells to fibrin under flow

11 June 2018

1 reference

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Distinct kinetic and molecular requirements govern CD44 binding to hyaluronan versus fibrin(ogen)

11 June 2018

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A hot-spot motif characterizes the interface between a designed ankyrin-repeat protein and its target ligand.

11 June 2018

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Teaching an Old Scaffold New Tricks: Monobodies Constructed Using Alternative Surfaces of the FN3 Scaffold

11 June 2018

1 reference

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Isolation of monobodies that bind specifically to the SH3 domain of the Fyn tyrosine protein kinase

11 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316159

Parallel Generalized Born Implicit Solvent Calculations with NAMD.

11 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316159

A biosensor generated via high-throughput screening quantifies cell edge Src dynamics

11 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316159

Single-molecule binding of CD44 to fibrin versus P-selectin predicts their distinct shear-dependent interactions in cancer

11 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316159

Isoform-specific monobody inhibitors of small ubiquitin-related modifiers engineered using structure-guided library design

11 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316159

DrugScorePPI webserver: fast and accurate in silico alanine scanning for scoring protein-protein interactions

11 June 2018

1 reference

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Chapter 15: Live-cell single-molecule force spectroscopy

11 June 2018

1 reference

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Development of novel protein scaffolds as alternatives to whole antibodies for imaging and therapy: status on discovery research and clinical validation.

11 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316159

Picomolar affinity fibronectin domains engineered utilizing loop length diversity, recursive mutagenesis, and loop shuffling

11 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316159

A Dominant Conformational Role for Amino Acid Diversity in Minimalist Protein–Protein Interfaces

11 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316159

The art of antibody process development

11 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316159

Protein therapeutics: a summary and pharmacological classification

11 June 2018

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Hot spots--a review of the protein-protein interface determinant amino-acid residues

11 June 2018

1 reference

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High-affinity single-domain binding proteins with a binary-code interface

11 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316159

Scalable molecular dynamics with NAMD

11 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316159

Antibody mimics based on human fibronectin type three domain engineered for thermostability and high-affinity binding to vascular endothelial growth factor receptor two.

11 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316159

High-affinity binders selected from designed ankyrin repeat protein libraries

11 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316159

Direct observation of catch bonds involving cell-adhesion molecules

11 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316159

A simple physical model for binding energy hot spots in protein-protein complexes

11 June 2018

1 reference

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Directed evolution of high-affinity antibody mimics using mRNA display

11 June 2018

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Probing protein conformational changes in living cells by using designer binding proteins: application to the estrogen receptor

11 June 2018

1 reference

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The folding nucleus of a fibronectin type III domain is composed of core residues of the immunoglobulin-like fold

11 June 2018

1 reference

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Detection of biological threat agents by immunomagnetic microsphere-based solid phase fluorogenic- and electro-chemiluminescence

11 June 2018

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Engineered protein scaffolds for molecular recognition

11 June 2018

1 reference

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The thermal stability of immunoglobulin: unfolding and aggregation of a multi-domain protein

11 June 2018

1 reference

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The fibronectin type III domain as a scaffold for novel binding proteins

11 June 2018

1 reference

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Anatomy of hot spots in protein interfaces

11 June 2018

1 reference

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Scaffolds for engineering novel binding sites in proteins

11 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316159

Structure-based drug design: computational advances.

11 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316159

Kinetic analysis of biosensor data: elementary tests for self-consistency.

11 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316159

VMD: visual molecular dynamics

11 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316159

Structure-based drug design

11 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316159

Hydrogen bonding in globular proteins

11 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316159

Molecular modeling software and methods for medicinal chemistry

11 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316159

Models for the Specific Adhesion of Cells to Cells

11 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316159

Electrostatics-defying interaction between arginine termini as a thermodynamic driving force in protein-protein interaction

11 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316159

Single-molecule analysis of cadherin-mediated cell-cell adhesion

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316159

Distinct kinetic and mechanical properties govern selectin-leukocyte interactions

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316159

Computational alanine scanning of protein-protein interfaces

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316159

Dissecting subunit interfaces in homodimeric proteins

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316159

Exploring the potential of the monobody scaffold: effects of loop elongation on the stability of a fibronectin type III domain

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316159

Comparison of simple potential functions for simulating liquid water

19 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FSREP08247

Particle mesh Ewald: An N⋅log(N) method for Ewald sums in large systems

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FSREP08247

Contribution of unusual arginine-arginine short-range interactions to stabilization and recognition in proteins

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25650239

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Two proteins with the same structure respond very differently to mutation: the role of plasticity in protein stability

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25650239

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Single molecule characterization of P-selectin/ligand binding

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25650239

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/SREP08247

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25650239%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25650239%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

PubMed publication ID

25650239

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25650239%20AND%20SRC:MED&resulttype=core&format=json