(Q41613255)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22696405%20AND%20SRC:MED&resulttype=core&format=json

5 February 2020

title

Real-space refinement with DireX: from global fitting to side-chain improvements (English)

1 reference

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5 February 2020

2

1 reference

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5 February 2020

author name string

Zhe Wang

series ordinal

1

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22696405%20AND%20SRC:MED&resulttype=core&format=json

5 February 2020

publication date

1 September 2012

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22696405%20AND%20SRC:MED&resulttype=core&format=json

5 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22696405%20AND%20SRC:MED&resulttype=core&format=json

5 February 2020

volume

97

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22696405%20AND%20SRC:MED&resulttype=core&format=json

5 February 2020

issue

9

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22696405%20AND%20SRC:MED&resulttype=core&format=json

5 February 2020

page(s)

687-697

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22696405%20AND%20SRC:MED&resulttype=core&format=json

Near-atomic resolution using electron cryomicroscopy and single-particle reconstruction

5 February 2020

cites work

1 reference

Towards atomic resolution structural determination by single-particle cryo-electron microscopy

21 January 2018

1 reference

Mechanism of folding chamber closure in a group II chaperonin

21 January 2018

1 reference

Automated main-chain model building by template matching and iterative fragment extension

21 January 2018

1 reference

Automated macromolecular model building for X-ray crystallography using ARP/wARP version 7

21 January 2018

1 reference

Modeling protein structure at near atomic resolutions with Gorgon

21 January 2018

1 reference

Identification of secondary structure elements in intermediate-resolution density maps

21 January 2018

1 reference

Simulated-annealing real-space refinement as a tool in model building.

21 January 2018

1 reference

Improved methods for building protein models in electron density maps and the location of errors in these models

21 January 2018

1 reference

Features and development of Coot

21 January 2018

1 reference

Fitting of high-resolution structures into electron microscopy reconstruction images.

21 January 2018

1 reference

Combining X-ray crystallography and electron microscopy

21 January 2018

1 reference

Quantitative fitting of atomic models into observed densities derived by electron microscopy.

21 January 2018

1 reference

Fitting atomic models into electron-microscopy maps

21 January 2018

1 reference

Docking structures of domains into maps from cryo-electron microscopy using local correlation

21 January 2018

1 reference

Inferential optimization for simultaneous fitting of multiple components into a CryoEM map of their assembly

21 January 2018

1 reference

Free R value: a novel statistical quantity for assessing the accuracy of crystal structures

21 January 2018

1 reference

Flexible multi-scale fitting of atomic structures into low-resolution electron density maps with elastic network normal mode analysis.

21 January 2018

1 reference

NORMA: a tool for flexible fitting of high-resolution protein structures into low-resolution electron-microscopy-derived density maps.

21 January 2018

1 reference

On the use of low-frequency normal modes to enforce collective movements in refining macromolecular structural models

21 January 2018

1 reference

Situs: A package for docking crystal structures into low-resolution maps from electron microscopy

21 January 2018

1 reference

Flexible fitting of atomic structures into electron microscopy maps using molecular dynamics

21 January 2018

1 reference

Flexible fitting of high-resolution x-ray structures into cryoelectron microscopy maps using biased molecular dynamics simulations

21 January 2018

1 reference

Accurate flexible fitting of high-resolution protein structures into cryo-electron microscopy maps using coarse-grained pseudo-energy minimization

21 January 2018

1 reference

Protein structure fitting and refinement guided by cryo-EM density

21 January 2018

1 reference

Refinement of protein structures by iterative comparative modeling and CryoEM density fitting

21 January 2018

1 reference

Combining efficient conformational sampling with a deformable elastic network model facilitates structure refinement at low resolution

21 January 2018

1 reference

Super-resolution biomolecular crystallography with low-resolution data

21 January 2018

1 reference

UCSF Chimera--a visualization system for exploratory research and analysis

21 January 2018

1 reference

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

21 January 2018

1 reference

Crystallography & NMR System: A New Software Suite for Macromolecular Structure Determination

21 January 2018

1 reference

Version 1.2 of the Crystallography and NMR system

21 January 2018

1 reference

MolProbity: all-atom structure validation for macromolecular crystallography

21 January 2018

1 reference

ATP-bound states of GroEL captured by cryo-electron microscopy

21 January 2018

1 reference

The crystal structure of the asymmetric GroEL-GroES-(ADP)7 chaperonin complex

21 January 2018

1 reference

Allosteric signaling of ATP hydrolysis in GroEL-GroES complexes

21 January 2018

1 reference

Role of the -phosphate of ATP in triggering protein folding by GroEL-GroES: function, structure and energetics

21 January 2018

1 reference

Crystal structures of the group II chaperonin from Thermococcus strain KS-1: steric hindrance by the substituted amino acid, and inter-subunit rearrangement between two crystal forms

21 January 2018

1 reference

De novo backbone trace of GroEL from single particle electron cryomicroscopy

21 January 2018

1 reference

Exploring the structural dynamics of the E.coli chaperonin GroEL using translation-libration-screw crystallographic refinement of intermediate states

21 January 2018

1 reference

Atomic structure of the major capsid protein of rotavirus: implications for the architecture of the virion

21 January 2018

1 reference

Lipid-protein interactions in double-layered two-dimensional AQP0 crystals

21 January 2018

1 reference

Principles of membrane protein interactions with annular lipids deduced from aquaporin-0 2D crystals

21 January 2018

1 reference

LGA: A method for finding 3D similarities in protein structures

21 January 2018

1 reference

Multi-resolution contour-based fitting of macromolecular structures

21 January 2018

1 reference

21 January 2018

Identifiers

DOI

10.1002/BIP.22046

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22696405%20AND%20SRC:MED&resulttype=core&format=json

5 February 2020

1 reference