(Q41787642)

English

Genome-wide binding profiles of the Bacillus subtilis transition state regulator AbrB and its homolog Abh reveals their interactive role in transcriptional regulation

scientific article published on 3 September 2010

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

9 October 2017

Genome-wide binding profiles of the Bacillus subtilis transition state regulator AbrB and its homolog Abh reveals their interactive role in transcriptional regulation (English)

1 reference

Europe PubMed Central

PMC publication ID

9 October 2017

Bacillus subtilis

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7

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author name string

Onuma Chumsakul

1

1 reference

Europe PubMed Central

PMC publication ID

9 October 2017

Hiroki Takahashi

2

1 reference

Europe PubMed Central

PMC publication ID

9 October 2017

Taku Oshima

3

1 reference

Europe PubMed Central

PMC publication ID

9 October 2017

Takahiro Hishimoto

4

1 reference

Europe PubMed Central

PMC publication ID

9 October 2017

Shigehiko Kanaya

5

1 reference

Europe PubMed Central

PMC publication ID

9 October 2017

Naotake Ogasawara

6

1 reference

Europe PubMed Central

PMC publication ID

9 October 2017

Shu Ishikawa

7

1 reference

Europe PubMed Central

PMC publication ID

9 October 2017

publication date

3 September 2010

1 reference

Europe PubMed Central

PMC publication ID

9 October 2017

Nucleic Acids Research

1 reference

Europe PubMed Central

PMC publication ID

9 October 2017

39

1 reference

Europe PubMed Central

PMC publication ID

9 October 2017

2

1 reference

Europe PubMed Central

PMC publication ID

9 October 2017

414-428

1 reference

Europe PubMed Central

PMC publication ID

9 October 2017

copyright license

Creative Commons Attribution-NonCommercial 2.5 Generic

7 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

0 references

CalA, a cyanobacterial AbrB protein, interacts with the upstream region of hypC and acts as a repressor of its transcription in the cyanobacterium Nostoc sp. strain PCC 7120.

1 reference

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Cannibalism enhances biofilm development in Bacillus subtilis

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SigmaX is involved in controlling Bacillus subtilis biofilm architecture through the AbrB homologue Abh

1 reference

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6 June 2018

NsrR targets in the Escherichia coli genome: new insights into DNA sequence requirements for binding and a role for NsrR in the regulation of motility

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Noc protein binds to specific DNA sequences to coordinate cell division with chromosome segregation

1 reference

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6 June 2018

Extracytoplasmic function sigma factors with overlapping promoter specificity regulate sublancin production in Bacillus subtilis

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6 June 2018

Differential binding profiles of StpA in wild-type and h-ns mutant cells: a comparative analysis of cooperative partners by chromatin immunoprecipitation-microarray analysis.

1 reference

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6 June 2018

Insights into the Nature of DNA Binding of AbrB-like Transcription Factors

1 reference

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6 June 2018

Crystal structure of SpoVT, the final modulator of gene expression during spore development in Bacillus subtilis

1 reference

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6 June 2018

Parallel pathways of repression and antirepression governing the transition to stationary phase in Bacillus subtilis

1 reference

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6 June 2018

The Escherichia coli RutR transcription factor binds at targets within genes as well as intergenic regions.

1 reference

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6 June 2018

Enhanced recombinant protein productivity by genome reduction in Bacillus subtilis

1 reference

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6 June 2018

An AbrB-Like protein regulates the expression of the bidirectional hydrogenase in Synechocystis sp. strain PCC 6803.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3025583

6 June 2018

Distribution of stable DnaA-binding sites on the Bacillus subtilis genome detected using a modified ChIP-chip method

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3025583

6 June 2018

Abh and AbrB control of Bacillus subtilis antimicrobial gene expression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3025583

6 June 2018

NMR structure of AbhN and comparison with AbrBN: FIRST insights into the DNA binding promiscuity and specificity of AbrB-like transition state regulator proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3025583

6 June 2018

Independent and interchangeable multimerization domains of the AbrB, Abh, and SpoVT global regulatory proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3025583

6 June 2018

AbrB-like transcription factors assume a swapped hairpin fold that is evolutionarily related to double-psi beta barrels

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3025583

6 June 2018

Complex regulation of the Bacillus subtilis aconitase gene

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3025583

6 June 2018

Bacillus subtilis sporulation and stationary phase gene expression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3025583

6 June 2018

Control of anthrax toxin gene expression by the transition state regulator abrB.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3025583

6 June 2018

DNA-binding activity of amino-terminal domains of the Bacillus subtilis AbrB protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3025583

6 June 2018

Growth phase-dependent variation in protein composition of the Escherichia coli nucleoid

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3025583

6 June 2018

Expression of AbrB, a transition state regulator from Bacillus subtilis, is growth phase dependent in a manner resembling that of Fis, the nucleoid binding protein from Escherichia coli

1 reference

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6 June 2018

In vitro selection of optimal AbrB-binding sites: comparison to known in vivo sites indicates flexibility in AbrB binding and recognition of three-dimensional DNA structures

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3025583

6 June 2018

A compartmentalized regulator of developmental gene expression in Bacillus subtilis

1 reference

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Transition-state regulators: sentinels of Bacillus subtilis post-exponential gene expression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3025583

6 June 2018

Modulation of Bacillus subtilis catabolite repression by transition state regulatory protein AbrB.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3025583

6 June 2018

Delineation of AbrB-binding sites on the Bacillus subtilis spo0H, kinB, ftsAZ, and pbpE promoters and use of a derived homology to identify a previously unsuspected binding site in the bsuB1 methylase promote

1 reference

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6 June 2018

AbrB modulates expression and catabolite repression of a Bacillus subtilis ribose transport operon

1 reference

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Fitting a mixture model by expectation maximization to discover motifs in biopolymers

1 reference

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6 June 2018

The SpoOA protein of Bacillus subtilis is a repressor of the abrB gene

1 reference

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6 June 2018

Assessment of transcriptional responses of Bacillus subtilis cells to the antibiotic enduracidin, which interferes with cell wall synthesis, using a high-density tiling chip.

1 reference

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18 August 2018

Cereulide synthesis in emetic Bacillus cereus is controlled by the transition state regulator AbrB, but not by the virulence regulator PlcR.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3025583

18 August 2018

An AbrB-like transcriptional regulator, Sll0822, is essential for the activation of nitrogen-regulated genes in Synechocystis sp. PCC 6803.

1 reference

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18 August 2018

An AbrB-like protein might be involved in the regulation of cylindrospermopsin production by Aphanizomenon ovalisporum

1 reference

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Revised structure of the AbrB N-terminal domain unifies a diverse superfamily of putative DNA-binding proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3025583

18 August 2018

Evaluation of the DNA binding tendencies of the transition state regulator AbrB.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3025583

18 August 2018

Macromolecular assembly of the transition state regulator AbrB in its unbound and complexed states probed by microelectrospray ionization mass spectrometry.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3025583

18 August 2018

A cyanobacterial AbrB-like protein affects the apparent photosynthetic affinity for CO2 by modulating low-CO2-induced gene expression

1 reference

https://pubmed.ncbi.nlm.nih.gov/20817675

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Bent DNA is found in some, but not all, regions recognized by the Bacillus subtilis AbrB protein

1 reference

https://pubmed.ncbi.nlm.nih.gov/20817675

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The DNA-binding domain in the Bacillus subtilis transition-state regulator AbrB employs significant motion for promiscuous DNA recognition

1 reference

https://pubmed.ncbi.nlm.nih.gov/20817675

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1093/NAR/GKQ780

1 reference

Europe PubMed Central

PMC publication ID

9 October 2017

DBLP publication ID

journals/nar/ChumsakulTOHKOI11

1 reference

DBLP Dataset 2021-01-02

28 January 2021

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

9 October 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

9 October 2017

ResearchGate publication ID

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